Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02728 ATGGCTTCCCCTTTGTTTCAGCATTCAGATTGGGGCATGTTGAAGGAGACTTGTGATATTTTGTTTGAACCATTTTCAAGCAAAGATATTTGTTGTGACCCTTTCCATGACTCTCTTACCTTTGATATGATTGAGCACTCAAGGGATCCACAGGAACCGAGTGAAGTGATTGAAGCTGTGGAAGTGGAGCATAGTAATAAGAAGTGTTATATTGGGGTAAGGAGAAGACCGTGGGGAAGGTTTGCGGCGGAGATCAGAGACGCAACGAGGAAAGGTACCAGAGTTTGGCTTGGAACCTTTTCTAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTCTCATGAGAGGATCAACTGCACTTCTGAATTTTCCTGTCAAAAGGGTTATAGAGTCTTTGCATGACCTCAATTACTTTGGTTGCAACCAAGGCTGCTCTCCGGCATTGGAACTAAAAAAGAGGCACAACATGCGACGAAAATTATCGTCAAAGGCTAAGGAAACTAAAACCTAG 519 0.4316 MASPLFQHSDWGMLKETCDILFEPFSSKDICCDPFHDSLTFDMIEHSRDPQEPSEVIEAVEVEHSNKKCYIGVRRRPWGRFAAEIRDATRKGTRVWLGTFSNAEEAALAYDQAAFLMRGSTALLNFPVKRVIESLHDLNYFGCNQGCSPALELKKRHNMRRKLSSKAKETKT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02728 172 PANTHER DNA-BINDING DOMAIN 58 152 IPR044808 GO:0003700|GO:0009873
Vimu6g02728 172 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Vimu6g02728 172 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Vimu6g02728 172 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Vimu6g02728 172 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Vimu6g02728 172 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Vimu6g02728 172 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Vimu6g02728 172 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vimu6g02728 172 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Vimu6g02728 172 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02728 Vimu-Chr6 23831912 23832430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02728 66 166 AP2-EREBP Transcription Factor Family AT3G23240 64.356 6.82e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g02728 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02728 K14516 - gmx:100800600 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02728 6 23831912 23832430 Vimu2g01628 2 11555123 11555874 ECH
Vimu6g02728 6 23831912 23832430 Vimu3g02466 3 39142721 39143350 ECH
Vimu6g02728 6 23831912 23832430 Vimu6g02728 6 23831912 23832430 ECH
Vimu6g02728 6 23831912 23832430 Vimu3g01304 3 23123344 23123856 PCT