Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02727 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACGCTTCAAACGCAGAGGTGAGGTACAGAGGGATTCGTAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGTGCTCGAATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGTGCTTACGATGCTGCTGCTTTTCGTTTTCGTGGTCACAAGGCCATACTCAACTTCCCTAACGAGTATGGCCACACCACTCCTAATCCTAACATGTTTTCAACTTCACAGCCTCTTAATGCTTCTTTTTCTTTTCCTTCTTACTCTGGTGGCGAGGGTTCCTCACAACAACAGCGAAATGGTGCTGCAACTTTTGAATTGGAATACTTGGACAATAAGTTGTTGGAAGAACTCCTTGAGACGCCTGATGGAACTGGCAACGACTCCAATTAA 441 0.4671 MEGGRGVVNGNASNAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFRFRGHKAILNFPNEYGHTTPNPNMFSTSQPLNASFSFPSYSGGEGSSQQQRNGAATFELEYLDNKLLEELLETPDGTGNDSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02727 146 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 PANTHER DNA-BINDING DOMAIN 14 135 IPR044808 GO:0003700|GO:0009873
Vimu6g02727 146 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vimu6g02727 146 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Vimu6g02727 146 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vimu6g02727 146 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vimu6g02727 146 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02727 Vimu-Chr6 23822543 23823200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02727 13 137 AP2-EREBP Transcription Factor Family AT3G23230 56.800 2.55e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu6g02727 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02727 - - gmx:100778998 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02727 6 23822543 23823200 Vimu6g02727 6 23822543 23823200 ECH
Vimu6g02727 6 23822543 23823200 Vimu3g01309 3 23258264 23258779 PCT