Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02726 ATGGATTTGTCTTTGGATTTAGATTTTGATTATCATCTTTTTCCAAACCAAAACCTTAACTTTTTCGATCCTTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGCGACGACCAAACCAAGGAATCATCTTCGGCGTCCAACGTTTCCGCTTCTGTGGGAAGCGTTGAGTTACAGGAAGTATCGTCCGACAACACAACCTACGAAGAAGTGTCGAAAATAACAGAGCCAGTGGCGCCGCCGGCGCCGGCTAAGGAGGGTAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCCGAGATAAGGGATTCGACTCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTACGACCAGGCGGCGTTCTCGACGAGGGGGTCTTTAGCGGTGCTGAATTTCCCGGTGGAAGTGGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCCCTCAAGAGAAAACACACTATGAGGAAAAAGTCCAGTTCGAAGAAGAAGAAAAGCAAAAGCGATGGCAAGGAGCAGTTGGAATTCTGCACCACTTCGCAGAATGTGCTGGTGTTCGAGGATTTGGGTGCTGAGTATCTAGAACAGCTTTTGAGTTTGACTTATTAG 687 0.5007 MDLSLDLDFDYHLFPNQNLNFFDPFSWDYNFDDIFNFSDDQTKESSSASNVSASVGSVELQEVSSDNTTYEEVSKITEPVAPPAPAKEGRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPVEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRKKSSSKKKKSKSDGKEQLEFCTTSQNVLVFEDLGAEYLEQLLSLTY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02726 228 FunFam Ethylene-responsive transcription factor 2 90 151 - -
Vimu6g02726 228 MobiDBLite consensus disorder prediction 178 199 - -
Vimu6g02726 228 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Vimu6g02726 228 SMART rav1_2 91 155 IPR001471 GO:0003700|GO:0006355
Vimu6g02726 228 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Vimu6g02726 228 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vimu6g02726 228 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Vimu6g02726 228 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Vimu6g02726 228 PANTHER DNA-BINDING DOMAIN 52 224 IPR044808 GO:0003700|GO:0009873
Vimu6g02726 228 SUPERFAMILY DNA-binding domain 91 151 IPR016177 GO:0003677
Vimu6g02726 228 ProSiteProfiles AP2/ERF domain profile. 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02726 Vimu-Chr6 23800665 23802129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02726 21 224 AP2-EREBP Transcription Factor Family AT2G31230 47.556 7.01e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g02726 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02726 K14516 - gmx:100779524 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02726 6 23800665 23802129 Vimu6g02726 6 23800665 23802129 ECH
Vimu6g02726 6 23800665 23802129 Vimu3g01311 3 23354677 23355963 PCT