Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02712 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCATGAAGAAGATCAAATTCTCATCAATTACATCAACATTTATGGCCATTCTAATTGGCGTGCTCTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGCTGTAGACTCCGGTGGATAAATTATCTCAGGCCAGACATCAAACGGGGCAACTTCACCCCAGAAGAAGAAGATGCTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCAAGAGCAACAACGAAGCAAAAAACAACCAAAGTTGGATGGGGACGCTTCCAAAACCAATTACCAAGACACCAAACTAGAACAACAACAAGACCCCGTGAATAACGTTCACGTTCATGCATCAACCAAAGAAGATAATAGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGATTTGTCTTCGCTCACCAATAGTGACAACAATAGCAGCATTAATAATAGTAATGATAATTGTGACATGTCCTCGCATGTTAATGATATTGACACACCGGAGAACAATCTTGCACTGGACGAGGATTTCTGGTCGGAAGTATTGTTATCTGACGATAGTTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGATTTGAACCATTGTCTAACGAAGAAGTAGGGGTGCTTATAGATGGTAATTCGTCAAGTATGAGCGATGGCATGGACTTTTGGTGCAACGTTTACGCCAGAGCTGAGGAATTCAACCACCCCAAGAACCCAACATTGGCGCCCACCGTGGGGCGAGGACTCAAGAATTCCCTAGGAGCAATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTAGTGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAAGTACTAAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGTAAAACTAGAGTCTCTATACATGACGAGATCGCTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATTGTTGATGATCTGGAGAATATTGGAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTAAATGCTCTTCCCAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACTGAGGAAGGGGCGTCCGGTCTGATCGCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGCTGCTTCAAATGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATTCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAACCTGGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGATGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGCTGCAGGCCGTCCGGTATGTGCCCGAACTAAAGAGAAATTTGATCTCGATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAAACTTGCTTCTGGGAGACAAACTGCAAAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGGCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAGAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAAAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAACAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGATTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGGCCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTGTGGAGGTTAGACTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGTACGCCCGGTGGGACTGAGGAAAACCAAACAGGTGAAGGGCAAGTTGAAACCGGTCGGTCGATAGCTGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGGCATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGACCTTAACCGACCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAAAATAACACCTGGAGATTGGTGGAGCTGCCGAAGGGTAAGAAGGTCATAGATTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTACCATGAGATTTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCACATTGCAATTTGCATCTTGAACAGTTGGACGTCCGGACGGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGGCGGTGAAATGTTGTATCTTCTGCTTTATGTGGATGATATCCTAATGGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTTGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAAACCGGACGGTAACCTTTTTCTGTCACAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAACACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATACATACGGGGGTCTCTCGGTACTGGATTGTTTTTCGAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCTTGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACGGCCGTTAGCTGGAGGTCTACACTACAGTCAGTAGTGGCTTTGTCAACTACGGAAGCCGAGTATTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTCGGTTTTGATCAGAAGTCTGTATGCGTTCATTGCGACAGCCAGAGTGCGATTCACCTGGCCAATCATCAGAGTTATCATTCCAGAACCAAACATATTGACGTCAAGCTACACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 4929 0.4685 MGRAPCCEKMGLKRGPWTHEEDQILINYINIYGHSNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTPEEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSQEQQRSKKQPKLDGDASKTNYQDTKLEQQQDPVNNVHVHASTKEDNSTEDMPLSPPQCSSDLSSLTNSDNNSSINNSNDNCDMSSHVNDIDTPENNLALDEDFWSEVLLSDDSSGETSGFPSIDYGRFEPLSNEEVGVLIDGNSSSMSDGMDFWCNVYARAEEFNHPKNPTLAPTVGRGLKNSLGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCSEALKGESKMSDTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWVKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIGVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLIAVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDSQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQDVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQNLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHKTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVETGRSIAENRSDEFRTDLGDDTDGMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDLNRPDEPRSYKEALDSSDRHLWQGAMEEELEALKKNNTWRLVELPKGKKVIDSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILMASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDKPDGNLFLSQECYLQKVISRYRMAESKMANTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLFFENNFQGGGYIEGFVDSDFAGCLDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQSYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02712 1642 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu6g02712 1642 SMART c2hcfinal6 535 551 IPR001878 GO:0003676|GO:0008270
Vimu6g02712 1642 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vimu6g02712 1642 CDD SANT 16 61 IPR001005 -
Vimu6g02712 1642 FunFam Transcription factor MYB15 68 141 - -
Vimu6g02712 1642 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1152 1394 IPR013103 -
Vimu6g02712 1642 Gene3D - 11 67 - -
Vimu6g02712 1642 SMART sant 66 114 IPR001005 -
Vimu6g02712 1642 SMART sant 13 63 IPR001005 -
Vimu6g02712 1642 SUPERFAMILY Ribonuclease H-like 773 946 IPR012337 -
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 1048 1069 - -
Vimu6g02712 1642 Pfam gag-polypeptide of LTR copia-type 362 491 - -
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 1022 1077 - -
Vimu6g02712 1642 Pfam GAG-pre-integrase domain 694 760 IPR025724 -
Vimu6g02712 1642 Gene3D - 768 946 IPR036397 GO:0003676
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 127 143 - -
Vimu6g02712 1642 Gene3D - 511 564 - -
Vimu6g02712 1642 CDD RNase_HI_RT_Ty1 1488 1626 - -
Vimu6g02712 1642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu6g02712 1642 FunFam MYB-related transcription factor 13 66 - -
Vimu6g02712 1642 CDD SANT 69 112 IPR001005 -
Vimu6g02712 1642 SUPERFAMILY DNA/RNA polymerases 1151 1594 IPR043502 -
Vimu6g02712 1642 Gene3D - 69 141 - -
Vimu6g02712 1642 ProSiteProfiles Zinc finger CCHC-type profile. 535 551 IPR001878 GO:0003676|GO:0008270
Vimu6g02712 1642 SUPERFAMILY Retrovirus zinc finger-like domains 526 556 IPR036875 GO:0003676|GO:0008270
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 507 529 - -
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 112 217 - -
Vimu6g02712 1642 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu6g02712 1642 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu6g02712 1642 Pfam Integrase core domain 773 872 IPR001584 GO:0015074
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 1025 1047 - -
Vimu6g02712 1642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu6g02712 1642 ProSiteProfiles Integrase catalytic domain profile. 771 937 IPR001584 GO:0015074
Vimu6g02712 1642 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu6g02712 1642 MobiDBLite consensus disorder prediction 144 215 - -
Vimu6g02712 1642 PANTHER GAG-POL-RELATED RETROTRANSPOSON 658 1638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02712 Vimu-Chr6 23693955 23703239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02712 1117 1596 Receptor kinase-like Gene Family AT4G23160 36.680 2.68e-90 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g02712 RVT_2 5.2e-72 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02712 - - bna:106351154 1067.37