Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02706 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTCCCCCCTGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGGGTGGAAATGTTAAGAAAAATGATAAATCTACAGCCTTTCCAGTTGCATCTGAAAAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGACATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCTGAGCGACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCATATGAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGTGGGTGTCCTAGTTGCAATAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACACCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAAACAAGAGAAAAAGAGATGTAGAAGTAGCTTTGGGCTCTCCGCTTTGTAAAAGAAACACTAGCACCCCAAATAACCATAATGTTGAAGAATGTGATTTTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCGGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAATATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATCCTTTGGCGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCAGGTTCCCTTCTTTCATTTGAAAGCCCTGATGTTTCGTGTAACCAAGACCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTACTCGTCTTCCCTGGGGTATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTTATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAGATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAACAAAAGCTTTCAACACTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACCAGTTCATTAGTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAAGAGGGAATGTAGTATTTGCCTGTGTGATTTACACTTGTCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCACTTGGAGCAACAAAATTTTCTTCTACCGATATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGACGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGTATCTTGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAACCACGCTCAGAAAACGTTGGTGGTTCAACCTTCCCTGCCCAAGACTTGCATACGAAAATATCTATATCCCAGACAGCAGCAAATAAATCAAAAGAGAAAACACGTCAATTGCAAGAAATATTGAATGCATCAAAGACAAAACAAAACGAAGAGGTTTCCCAGGTCTCACAGACTTCTGGTGACACTCACAGTTCATATGGCACTCATTCGAAAACGAAGACAGATTGGCTTCAGTCAAGCTGTGCAAGTGGTACGAAAGGAATCAGTTCTGTTGGCACCAAAATTGATACGGAGATGGTTGGGAGCAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGTTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAG 2388 0.3995 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKGGNVKKNDKSTAFPVASEKEPNCMKTELETNDIDAYRQGLIRRPWINMDLSDNHKPKESHTKHLHMNLPINPSRPKGTIRGCPSCNNCVKVTARWHPKDAIREDLEEAPIFHPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKNKRKRDVEVALGSPLCKRNTSTPNNHNVEECDFESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSNIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDPLAANAYPEYLKSGWNLNNILSGSLLSFESPDVSCNQDPNVSVGMCFSAVNWEMQLSCSILKAEGIPVYRCVQYPREFVLVFPGVYHSGFDCGFNCSESVSFAPLEWLLYGQNVVELYREQRKKTLFSYDKLLLGAADEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLTKAFNTRIQSEILKRKFLTSSLVSQRMDEKFYATCKRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCSCTWSNKIFFYRYEISELNVLRQALDGKLSAVFKWAKEYLGLTLNSAASKRSKPRSENVGGSTFPAQDLHTKISISQTAANKSKEKTRQLQEILNASKTKQNEEVSQVSQTSGDTHSSYGTHSKTKTDWLQSSCASGTKGISSVGTKIDTEMVGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02706 795 Coils Coil 794 795 - -
Vimu6g02706 795 SUPERFAMILY Clavaminate synthase-like 265 494 - -
Vimu6g02706 795 Pfam jmjN domain 142 175 IPR003349 -
Vimu6g02706 795 SMART cupin_9 358 468 IPR003347 -
Vimu6g02706 795 SMART JmjN_1 140 181 IPR003349 -
Vimu6g02706 795 Gene3D Cupin 126 403 - -
Vimu6g02706 795 ProSiteProfiles JmjC domain profile. 302 468 IPR003347 -
Vimu6g02706 795 MobiDBLite consensus disorder prediction 686 714 - -
Vimu6g02706 795 Pfam C5HC2 zinc finger 559 609 IPR004198 -
Vimu6g02706 795 PANTHER LYSINE-SPECIFIC DEMETHYLASE 403 723 - -
Vimu6g02706 795 Pfam JmjC domain, hydroxylase 401 451 IPR003347 -
Vimu6g02706 795 Gene3D Cupin 404 497 - -
Vimu6g02706 795 ProSiteProfiles JmjN domain profile. 141 182 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02706 Vimu-Chr6 23610566 23615653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02706 15 686 JUMONJI Transcription Factor Family AT2G38950 36.314 6.42e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu6g02706 zf-C5HC2 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02706 K11446 - cave:132166310 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02706 6 23610566 23615653 Vimu6g02706 6 23610566 23615653 ECH