Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02705 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGCTTTTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTCAAGGGTACCTTGGTCGAAATCGACCTCCATATATGTGAACCATGGCAACTTCCAGAGGTGGCGAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACTTCAGGGTATTGGAAAGCAACAGGAAAAGATCGAACGGTGGTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACTGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTGTGTAGAGTCTTCCACAAAAGCAAAGAAGAAAACAACAGTTCGAAACTCATGTACGAGTATGATACAACACCTCAATCCCTAACCATGGCGTCGTCATCTCCCACCATGAACAGATTTTCTACCTCTTTCCCTTCCTCCATGCCATTGCCAAGCAACCACCACCATCATCACCATTTCAACACAAACCAAAACTCTTCTTTCATGGATCTTCTTCATTTCTCTCGAGACACCAACACCATCGTTACTTCCAAAGGTGATGATGGATATGGTTTCCTATGGGACATGGATTTGGAAGAAAATAGCTTACAAGATGCCGTGGCTTCAAACTTGGATGCAATAACCTTCGAGGTTGATAATAATAATAACAGTGAAAATAATATGGTATTCCTATAG 843 0.4603 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNSSKLMYEYDTTPQSLTMASSSPTMNRFSTSFPSSMPLPSNHHHHHHFNTNQNSSFMDLLHFSRDTNTIVTSKGDDGYGFLWDMDLEENSLQDAVASNLDAITFEVDNNNNSENNMVFL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02705 280 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 212 - -
Vimu6g02705 280 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vimu6g02705 280 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vimu6g02705 280 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Vimu6g02705 280 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02705 Vimu-Chr6 23595450 23600517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02705 6 159 NAC Transcription Factor Family AT1G56010 58.025 3.72e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g02705 NAM 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02705 - - gmx:100782751 455.292