Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02700 ATGGATTCTGCAAGGAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCTCTACTAGAAAGAAAGACGATACTCATGGTGGGAATGACGCTCCAAACGTGCCTCTGGACGAAGCAGCACTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAGATGAAGAACCTTCAGGAAAGGAAAGAACGTCGAACCATCTTGGAAAAGAAGTTGGCAGATGCTGATGTATCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAGATGGGTGTAGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGACTACAGATCATGTATTTGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGAGGAGTATTTATATCTTATTATGGAGTATCTACCTGGTGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTGGCCATTGAATCAATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTTGATAAATATGGACACTTGAGACTGTCAGATTTTGGGTTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACGGATTTTTCTGCTGGTCAAAATGCAAATGGATTTCCTCAAAGTGATGAATCTGGACGCACACAACAAGAACAATTGCAACACTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTCGGTACACCAGACTATATTGCTCCAGAAGTTCTATTAAAGAAAGGCTACGGGATGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCTGACGATCCAATGTCAACATGTAGAAAGATAGTAAATTGGAAATCTCATTTAAAGTTTCCTGAAGAAGCAAGGTTATCTGTAGAGGCTAAAGATCTTATCAGTAAGCTTTTGTGTAATGTGAACCAGAGACTGGGCTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTTTTCAATGGTGTTGAGTGGGAAAGATTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAACGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACCACCAGACTAAATCAGCATCAAGAACTGGCGGTCCATGGAGAAAGATGCTTTCATCTAAAGACATGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGACTGAATTAAGAAAGAAAACTTCTAAAGTAAAGAAGCCATCTGTTAAGTCTCTCTTTGATTGCGATTCTGATACATCTGAAGCATCTGTATCCGAGGCTTCTGATTCAATTGCAAGCACAACTAAAAAGATTGATGATCAACATACTCATTCAGAATAG 1638 0.3797 MDSARSWLQKFQPRDKLRASTRKKDDTHGGNDAPNVPLDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSAGQNANGFPQSDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSVEAKDLISKLLCNVNQRLGSNGADEIKAHPFFNGVEWERLYQMEAAFIPEVNDELDTQNFEKFDESDHQTKSASRTGGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMTELRKKTSKVKKPSVKSLFDCDSDTSEASVSEASDSIASTTKKIDDQHTHSE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02700 545 Pfam Protein kinase C terminal domain 434 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vimu6g02700 545 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu6g02700 545 MobiDBLite consensus disorder prediction 513 545 - -
Vimu6g02700 545 MobiDBLite consensus disorder prediction 1 38 - -
Vimu6g02700 545 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Vimu6g02700 545 MobiDBLite consensus disorder prediction 9 30 - -
Vimu6g02700 545 Gene3D Phosphorylase Kinase; domain 1 118 444 - -
Vimu6g02700 545 Gene3D Transferase(Phosphotransferase) domain 1 204 433 - -
Vimu6g02700 545 MobiDBLite consensus disorder prediction 279 299 - -
Vimu6g02700 545 Pfam Protein kinase domain 121 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02700 545 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02700 545 CDD MobB_NDR_LATS-like 54 115 - -
Vimu6g02700 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 468 - -
Vimu6g02700 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu6g02700 545 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vimu6g02700 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vimu6g02700 545 SUPERFAMILY Protein kinase-like (PK-like) 93 459 IPR011009 -
Vimu6g02700 545 MobiDBLite consensus disorder prediction 513 531 - -
Vimu6g02700 545 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vimu6g02700 545 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vimu6g02700 545 CDD STKc_NDR_like 118 480 - -
Vimu6g02700 545 MobiDBLite consensus disorder prediction 444 464 - -
Vimu6g02700 545 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02700 545 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02700 Vimu-Chr6 23546639 23551530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02700 1 509 AGC Kinase Gene Family AT1G03920 79.017 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu6g02700 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02700 K08790 - gmx:100783286 972.23