Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02699 ATGGATCATGTTATTGGTGGGAAATTTAAATTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATTGCTGTTAATATACAAACTGGAGAGGAGGTGGCTATCAAGCTGCTTAATAGATGTCCTGAATCTTCTTCTATTTATGAATCCAAAATCATTAGTCTCAAGCTATTCCCTCAAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGATTACAATGCGATGGCAATTGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCACTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTGATGGGCCTTGGACGTAAAGCAAACCAGGAAGAAGAAGAAAAGGAGCAGAGAGTCATTAAGTTTAGATTTAGGAGTCGCTTTCTTCAACAAAGCATGAGACAGTACCTCACATGTCATGGTGCTTCGGATGTTGGCTTGTCAAGGCCTCTTCTACACCTTGAAACTCACAAGGCATTCTTCAAAGTTTACATAATCGACTATGGCCTTGCAAAGAAATATAGGGATCTTCAGACACATAGGCACATACCATACAGGGAAAACAAGAACCTTACTGGCACAGCTAGGTATGCAAGTGTTAACACTCATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGGTCAGAACAATTGATAGAGACATCTACTGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTCCGATAGAGCTTTTGGATAAATTTGATATTCCCTCTGGACCTAGTATGTGCAATGAATTTGGTTGGATGTTGTTGAATGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATCGGTGGGAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAGATATCAGTTGGGAAAGAGATTCGGGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAATCCAACAAGTTCTAGTCCTCGAGGTGATCACTCCAAACATAGGGGTTTTGAGGAAGGAGCAGTGCACAAGGACGTGTATCATGATCAAGAGAAGGGACGTAATTCATCTCGATATGGTAGCAGTTCAAGAAGAGCTATAATCTCATCATCAACCAGGCCGAGTTCCTCCGGTGATCATACTGACAGTCGTACTGGCCGGCTCACCTCAAGTTTGAGCCGTCCATCAACAACACATAGAAACATTCAACCTATGTACGAGACCAAACAACCAACGTACACACGGTCTGGATCTACCAGAGGCAACCGTGACGACCCTCTCCGGAGTTTTGAACTCCTCTCTATCAGGAAAACTATTGATCTCAAGCTTTATGGAATCATGTTCACGTATATTATTGCATTGCCATGA 1557 0.4188 MDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAIKLLNRCPESSSIYESKIISLKLFPQTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQEEEEKEQRVIKFRFRSRFLQQSMRQYLTCHGASDVGLSRPLLHLETHKAFFKVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGRSEQLIETSTGLKAGTKKQKYDKISEKKMSTPIELLDKFDIPSGPSMCNEFGWMLLNGYQFDYVFDWTILKYPQIGGSSRGRHESGKAAMHAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRGFEEGAVHKDVYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSLSRPSTTHRNIQPMYETKQPTYTRSGSTRGNRDDPLRSFELLSIRKTIDLKLYGIMFTYIIALP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02699 518 MobiDBLite consensus disorder prediction 363 377 - -
Vimu6g02699 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vimu6g02699 518 Gene3D Transferase(Phosphotransferase) domain 1 1 162 - -
Vimu6g02699 518 Gene3D Transferase(Phosphotransferase) domain 1 185 373 - -
Vimu6g02699 518 MobiDBLite consensus disorder prediction 389 418 - -
Vimu6g02699 518 MobiDBLite consensus disorder prediction 419 483 - -
Vimu6g02699 518 SUPERFAMILY Protein kinase-like (PK-like) 4 299 IPR011009 -
Vimu6g02699 518 SMART serkin_6 9 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02699 518 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu6g02699 518 PANTHER CASEIN KINASE-RELATED 9 439 - -
Vimu6g02699 518 ProSiteProfiles Protein kinase domain profile. 9 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02699 518 Pfam Protein kinase domain 10 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02699 518 MobiDBLite consensus disorder prediction 339 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02699 Vimu-Chr6 23527237 23533509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02699 7 136 CBL-interacting serine-threonine protein kinases AT4G24400 32.143 1.82e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu6g02699 Pkinase 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02699 K08960 K08957 gmx:100807882 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02699 6 23527237 23533509 Vimu6g02699 6 23527237 23533509 ECH
Vimu6g02699 6 23527237 23533509 Vimu3g01443 3 27268339 27277124 PCT