Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02691 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCAGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTGAAAGGTGAGGATGAAACGGTTCCTTCCTCAGAATCTCTTGGAATCAGGGAATTTTATTCATCAACGGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTAGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGTTGGTTTCTTCAAAAATCCCTTGCTTTCTTCATTTGATGATACCCTGAATCATAACTTAGATTTTGATGTACTATGCTTTGCTCTTGCTTACTTACTCCAGAGAGATCCAAGTCCTTTGGAAGCTAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAGCACTCCTATTATTATGCTACTCCTCCAATGTCCATATACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAACGAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTATAGTTATTCTGGACACAGTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTTGGCAACGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTACACAAATGGAATCTTGATGCAAAAACTGTAGCAAGGATTCAAAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAAGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCTCTATCTGTTTCAGGGGACTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGATACCAGGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCCTTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGGAAATGTAATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGTATTTCTAATTCTGAGAGGGTTGAGAAACAAACCGAGGCACTACATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTGATATACAGTTTGAGTTTAGAATACGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCTGCTCAGAAACAGTTTTTAGATGCTGAATCTATCCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTACGAACAAAAGCTAAACTACAAATAGTGCAGGGCCAGTTAAAAACTGCCATTGAAACATATACTCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTTTACATAAGTCTGTCACGATGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACTATGTACGAAGCAAAGGGGGTTCACGAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTCCTTAGGAGGTGCAGTAATCGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATATAACGCTTCTGCATGGTATAATCTTGGCATTTTCCACAAGGACGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGATGAATCGGCTCCAGTTGAACCTTTCAGATGA 2301 0.4133 MGSRVKQGRRLQKMMKCLCVREPVKGEDETVPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSSKIDETELSLRESGILDNEVGFFKNPLLSSFDDTLNHNLDFDVLCFALAYLLQRDPSPLEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSYYYATPPMSIYTAGLLLEAIFLKTKCLQVLGRFKEAAQTCIVILDTVESSFPEGLPQNFGNEGKLQETLSKVVELLPDLWKLADSPRDVILSYRRALLHKWNLDAKTVARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGKCNQLEGLSSCLLGVSLSTHSKFCISNSERVEKQTEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLDAALHYAKCFLNLEAGSSVKGWLLLARILSAQKQFLDAESILNEALDQTGIWDQGELLRTKAKLQIVQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGVHEEALKAFRDALNIDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLDESAPVEPFR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02691 766 PANTHER PROTEIN NPG1 15 83 IPR043376 -
Vimu6g02691 766 Gene3D Tetratricopeptide repeat domain 104 600 IPR011990 GO:0005515
Vimu6g02691 766 ProSiteProfiles TPR repeat profile. 727 760 IPR019734 GO:0005515
Vimu6g02691 766 ProSiteProfiles TPR repeat profile. 657 690 IPR019734 GO:0005515
Vimu6g02691 766 Pfam Tetratricopeptide repeat 658 689 IPR019734 GO:0005515
Vimu6g02691 766 Gene3D Tetratricopeptide repeat domain 601 761 IPR011990 GO:0005515
Vimu6g02691 766 SUPERFAMILY TPR-like 476 596 IPR011990 GO:0005515
Vimu6g02691 766 SUPERFAMILY TPR-like 568 757 IPR011990 GO:0005515
Vimu6g02691 766 SMART tpr_5 531 564 IPR019734 GO:0005515
Vimu6g02691 766 SMART tpr_5 623 656 IPR019734 GO:0005515
Vimu6g02691 766 SMART tpr_5 657 690 IPR019734 GO:0005515
Vimu6g02691 766 SMART tpr_5 727 760 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02691 Vimu-Chr6 23463830 23468551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02691 15 766 Calmodulin-binding Proteins AT4G28600 51.369 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02691 K21843 - gmx:100784353 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02691 6 23463830 23468551 Vimu6g02691 6 23463830 23468551 ECH