Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02682 ATGCTAGACATGACAAATTTTCAAAGTCTTCACACTCTAGTTCTTCCAATTATCTTCCTGTGTTTGTTTCCTTTGAGAATCGGTTCATCACCAACAGCAGAAGCAGAAGCACTTGTCAAATGGAAAAACAGTCTAACAGCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTCACCAAACTTTGCTTTTGGGATGCCATTGTTTGTGACAATACCACCACAACAGTCTTAGAAATAAACTTGTCTGCTGCCAATATCACTGGGACTATTACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTTGATACCAACCGTTTTCATGGCTCAATACCACCAGCAATTGGTAACCTCTCCAAGCTCACACTCTTGAACTTGGGGAACAACTTATTTGAAGATGCACTGCCTAAAGAACTAGGCCTGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATCAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTGACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTCAATTCCCCAGTTTCTTACTGGACTGCCGTAACTTGACATATCTTGACATCTCTCAGAATGGATGGAATGGAACTATTCCAGAATCTTTGTATACCAATTTGGGCAAGCTTGAATTCCTCAACCTCACCAACAATGGGTTTGAAGGAAAGCTGTCGCCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATTGGTAATAACTTGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAGTAACATTTCTGCCCATGGGAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCGTCTTGATCTCAGTATAAATTCTTTTAACTCTACAATCCCTTCGGAGCTTGGCTTGTGCACAAATCTGTCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTACACTCCTCTCTAATTGGACCCAGCTTATCTCCTTGCAAGTCCAAAACAATAATTTTACTGGAAAGATTCCTCCGGAGATTGGCCTGTTGAAAAGAATTAACTACCTCTTTCTGTATAATAATCACTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGAAATGGTTAGACCTTTCAACAAACCAATTCTCTGGCCCAATTCCATCAACTCTTTGGGATCTGACTAACATTCAAGTCATGAATCTTTTCTTCAATGAACTCTCTGGAAGCATTCCCGCGGATATTGGAAATTTTACCTTTCTTGAAATCTTTGATGTCAACAGCAATTACTTGTATGGGGAGTTGCCAGAAACCATTGCTCAACTAGCTGCTTTAAAAAGTTTTTCAGTGTTCAGCAATAACTTCACCGGCAGTATTCCTAGAGAATTTGGAAAGGGAAATCCTTCTTTGACTGCTGTCTACCTTTCAAACAACAGCTTTTATGGAGAACTGCCACTCGACTTGTGCAGTGGTGGCCAGCTAACTACTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCACCACTAGTTAGAGTTCGGCTTGATAATAACCAGCTCACTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTCGTTTTGATATCACTTAGTACAAACCAACTGGTTGGTGAGCTCTCCCCGGATTGGGGCGGATGCGCCACCTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGCTGAGTCAATTAGGGTATTTAAACCTTCATTCCAATGAATTCGCTGGTAGTATCCCACCTGAAATCGGAAATCTAAGCCGGCTTTTCAGATTGAATTTGAGCAGTAACCATTTATCAGGAGAAATCCCGAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATTGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTCTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGATCAGCCTTCAATCTGTTGATTTTTCTTATAATAAACTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCGAGACAGCGACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAGAAGGATTAACTTGCCCCATATCACTTTCCCCTGAAAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTCATCATTCCAGTTTGTGTATTAATTGGGTTAATTAGTGTTGGAGCAATACTTTGCCGGCGGCATATCATAAAACACGCTGATGAAGAGTCCAAAAACAATGAAAAAAGTGACCAGCCGATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGTCAAGTCGTTGCTGTGAAGAGGCTCAACATATCAGACTCTGATGACATTCCACCAATGAACCGCCTGAGCTTTTTGAATGAGATAGAAGTACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATATAGACAGAGGAAGTTTGGCAAAGGTGTTGTACGGAGAGGAAGGACAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGACTGTTCCCCACAAATCGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGATTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCCGACACTTCAACGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACGGAGGAAGCACAAGTGCTACTGAAGGACGTGGTAGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCATGATAACCATGAACAAGCTTAGCGGCTTCCAGAAATAG 3693 0.4251 MLDMTNFQSLHTLVLPIIFLCLFPLRIGSSPTAEAEALVKWKNSLTAPLPPSLNSWSLTNLTKLCFWDAIVCDNTTTTVLEINLSAANITGTITALDFASLPNLTQLNLDTNRFHGSIPPAIGNLSKLTLLNLGNNLFEDALPKELGLLRELRYLSLYNNNLNGTIPYQLINLPKVWYMDLGSNYFITPLDWSQYSCMPSLTRLALHLNPTLTGQFPSFLLDCRNLTYLDISQNGWNGTIPESLYTNLGKLEFLNLTNNGFEGKLSPNLSMLSNLKELRIGNNLFNGPVPTEIGLISGLQILELSNISAHGKIPSSLGQLRELWRLDLSINSFNSTIPSELGLCTNLSFLSLAVNDLTGPLPMSLANLTKISELGLSDNSFSGELSATLLSNWTQLISLQVQNNNFTGKIPPEIGLLKRINYLFLYNNHFSGPIPVEIGNLKEMKWLDLSTNQFSGPIPSTLWDLTNIQVMNLFFNELSGSIPADIGNFTFLEIFDVNSNYLYGELPETIAQLAALKSFSVFSNNFTGSIPREFGKGNPSLTAVYLSNNSFYGELPLDLCSGGQLTTLAVNNNSFSGPLPKSLRNCSPLVRVRLDNNQLTGNITDAFGVLPNLVLISLSTNQLVGELSPDWGGCATLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFAGSIPPEIGNLSRLFRLNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGALPQNLEKLRALEILNVSHNHLSGTIPRSFSSMISLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPISLSPEKSGGVNKKVLLGVIIPVCVLIGLISVGAILCRRHIIKHADEESKNNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLPTGQVVAVKRLNISDSDDIPPMNRLSFLNEIEVLTGVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLAKVLYGEEGQLELRWAKRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLKDVVDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPFSMITMNKLSGFQK 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02682 1230 SMART LRR_typ_2 248 272 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 658 682 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 441 465 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 149 173 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 610 634 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 706 730 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 101 125 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 779 802 IPR003591 -
Vimu6g02682 1230 SMART LRR_typ_2 320 344 IPR003591 -
Vimu6g02682 1230 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 852 - -
Vimu6g02682 1230 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1011 - -
Vimu6g02682 1230 Gene3D Ribonuclease Inhibitor 389 484 IPR032675 -
Vimu6g02682 1230 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Vimu6g02682 1230 Pfam Protein kinase domain 933 1199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02682 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Vimu6g02682 1230 Gene3D Ribonuclease Inhibitor 485 850 IPR032675 -
Vimu6g02682 1230 SUPERFAMILY L domain-like 246 552 - -
Vimu6g02682 1230 Gene3D Ribonuclease Inhibitor 191 291 IPR032675 -
Vimu6g02682 1230 ProSiteProfiles Protein kinase domain profile. 931 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02682 1230 SUPERFAMILY Protein kinase-like (PK-like) 907 1205 IPR011009 -
Vimu6g02682 1230 FunFam MDIS1-interacting receptor like kinase 2 1012 1211 - -
Vimu6g02682 1230 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Vimu6g02682 1230 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 390 482 - -
Vimu6g02682 1230 FunFam MDIS1-interacting receptor like kinase 2 31 192 - -
Vimu6g02682 1230 Pfam Leucine rich repeat 761 816 IPR001611 GO:0005515
Vimu6g02682 1230 FunFam MDIS1-interacting receptor like kinase 2 196 389 - -
Vimu6g02682 1230 Gene3D Ribonuclease Inhibitor 292 388 IPR032675 -
Vimu6g02682 1230 SUPERFAMILY L domain-like 564 828 - -
Vimu6g02682 1230 Gene3D Transferase(Phosphotransferase) domain 1 1012 1216 - -
Vimu6g02682 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 496 1207 - -
Vimu6g02682 1230 SUPERFAMILY RNI-like 76 314 - -
Vimu6g02682 1230 Gene3D Phosphorylase Kinase; domain 1 892 1011 - -
Vimu6g02682 1230 CDD STKc_IRAK 937 1205 - -
Vimu6g02682 1230 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02682 Vimu-Chr6 23417805 23421759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02682 13 652 Receptor kinase-like Gene Family AT4G08850 32.399 2.04e-82 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g02682 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02682 - - pvu:PHAVU_001G163700g 2021.9