Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02682 | ATGCTAGACATGACAAATTTTCAAAGTCTTCACACTCTAGTTCTTCCAATTATCTTCCTGTGTTTGTTTCCTTTGAGAATCGGTTCATCACCAACAGCAGAAGCAGAAGCACTTGTCAAATGGAAAAACAGTCTAACAGCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTCACCAAACTTTGCTTTTGGGATGCCATTGTTTGTGACAATACCACCACAACAGTCTTAGAAATAAACTTGTCTGCTGCCAATATCACTGGGACTATTACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTTGATACCAACCGTTTTCATGGCTCAATACCACCAGCAATTGGTAACCTCTCCAAGCTCACACTCTTGAACTTGGGGAACAACTTATTTGAAGATGCACTGCCTAAAGAACTAGGCCTGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATCAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTGACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTCAATTCCCCAGTTTCTTACTGGACTGCCGTAACTTGACATATCTTGACATCTCTCAGAATGGATGGAATGGAACTATTCCAGAATCTTTGTATACCAATTTGGGCAAGCTTGAATTCCTCAACCTCACCAACAATGGGTTTGAAGGAAAGCTGTCGCCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATTGGTAATAACTTGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGAGTAACATTTCTGCCCATGGGAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCGTCTTGATCTCAGTATAAATTCTTTTAACTCTACAATCCCTTCGGAGCTTGGCTTGTGCACAAATCTGTCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTACACTCCTCTCTAATTGGACCCAGCTTATCTCCTTGCAAGTCCAAAACAATAATTTTACTGGAAAGATTCCTCCGGAGATTGGCCTGTTGAAAAGAATTAACTACCTCTTTCTGTATAATAATCACTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGAAATGGTTAGACCTTTCAACAAACCAATTCTCTGGCCCAATTCCATCAACTCTTTGGGATCTGACTAACATTCAAGTCATGAATCTTTTCTTCAATGAACTCTCTGGAAGCATTCCCGCGGATATTGGAAATTTTACCTTTCTTGAAATCTTTGATGTCAACAGCAATTACTTGTATGGGGAGTTGCCAGAAACCATTGCTCAACTAGCTGCTTTAAAAAGTTTTTCAGTGTTCAGCAATAACTTCACCGGCAGTATTCCTAGAGAATTTGGAAAGGGAAATCCTTCTTTGACTGCTGTCTACCTTTCAAACAACAGCTTTTATGGAGAACTGCCACTCGACTTGTGCAGTGGTGGCCAGCTAACTACTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCACCACTAGTTAGAGTTCGGCTTGATAATAACCAGCTCACTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTCGTTTTGATATCACTTAGTACAAACCAACTGGTTGGTGAGCTCTCCCCGGATTGGGGCGGATGCGCCACCTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGCTGAGTCAATTAGGGTATTTAAACCTTCATTCCAATGAATTCGCTGGTAGTATCCCACCTGAAATCGGAAATCTAAGCCGGCTTTTCAGATTGAATTTGAGCAGTAACCATTTATCAGGAGAAATCCCGAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATTGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTCTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGATCAGCCTTCAATCTGTTGATTTTTCTTATAATAAACTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCGAGACAGCGACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAGAAGGATTAACTTGCCCCATATCACTTTCCCCTGAAAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTCATCATTCCAGTTTGTGTATTAATTGGGTTAATTAGTGTTGGAGCAATACTTTGCCGGCGGCATATCATAAAACACGCTGATGAAGAGTCCAAAAACAATGAAAAAAGTGACCAGCCGATCAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGTCAAGTCGTTGCTGTGAAGAGGCTCAACATATCAGACTCTGATGACATTCCACCAATGAACCGCCTGAGCTTTTTGAATGAGATAGAAGTACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATATAGACAGAGGAAGTTTGGCAAAGGTGTTGTACGGAGAGGAAGGACAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGACTGTTCCCCACAAATCGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGATTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCCGACACTTCAACGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACGGAGGAAGCACAAGTGCTACTGAAGGACGTGGTAGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCATGATAACCATGAACAAGCTTAGCGGCTTCCAGAAATAG | 3693 | 0.4251 | MLDMTNFQSLHTLVLPIIFLCLFPLRIGSSPTAEAEALVKWKNSLTAPLPPSLNSWSLTNLTKLCFWDAIVCDNTTTTVLEINLSAANITGTITALDFASLPNLTQLNLDTNRFHGSIPPAIGNLSKLTLLNLGNNLFEDALPKELGLLRELRYLSLYNNNLNGTIPYQLINLPKVWYMDLGSNYFITPLDWSQYSCMPSLTRLALHLNPTLTGQFPSFLLDCRNLTYLDISQNGWNGTIPESLYTNLGKLEFLNLTNNGFEGKLSPNLSMLSNLKELRIGNNLFNGPVPTEIGLISGLQILELSNISAHGKIPSSLGQLRELWRLDLSINSFNSTIPSELGLCTNLSFLSLAVNDLTGPLPMSLANLTKISELGLSDNSFSGELSATLLSNWTQLISLQVQNNNFTGKIPPEIGLLKRINYLFLYNNHFSGPIPVEIGNLKEMKWLDLSTNQFSGPIPSTLWDLTNIQVMNLFFNELSGSIPADIGNFTFLEIFDVNSNYLYGELPETIAQLAALKSFSVFSNNFTGSIPREFGKGNPSLTAVYLSNNSFYGELPLDLCSGGQLTTLAVNNNSFSGPLPKSLRNCSPLVRVRLDNNQLTGNITDAFGVLPNLVLISLSTNQLVGELSPDWGGCATLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFAGSIPPEIGNLSRLFRLNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGALPQNLEKLRALEILNVSHNHLSGTIPRSFSSMISLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPISLSPEKSGGVNKKVLLGVIIPVCVLIGLISVGAILCRRHIIKHADEESKNNEKSDQPISVVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLPTGQVVAVKRLNISDSDDIPPMNRLSFLNEIEVLTGVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLAKVLYGEEGQLELRWAKRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLKDVVDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPFSMITMNKLSGFQK | 1230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 248 | 272 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 658 | 682 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 441 | 465 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 149 | 173 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 610 | 634 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 706 | 730 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 101 | 125 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 779 | 802 | IPR003591 | - | |
Vimu6g02682 | 1230 | SMART | LRR_typ_2 | 320 | 344 | IPR003591 | - | |
Vimu6g02682 | 1230 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 538 | 852 | - | - | |
Vimu6g02682 | 1230 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 894 | 1011 | - | - | |
Vimu6g02682 | 1230 | Gene3D | Ribonuclease Inhibitor | 389 | 484 | IPR032675 | - | |
Vimu6g02682 | 1230 | Gene3D | Ribonuclease Inhibitor | 31 | 190 | IPR032675 | - | |
Vimu6g02682 | 1230 | Pfam | Protein kinase domain | 933 | 1199 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu6g02682 | 1230 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 1057 | 1069 | IPR008266 | GO:0004672|GO:0006468 | |
Vimu6g02682 | 1230 | Gene3D | Ribonuclease Inhibitor | 485 | 850 | IPR032675 | - | |
Vimu6g02682 | 1230 | SUPERFAMILY | L domain-like | 246 | 552 | - | - | |
Vimu6g02682 | 1230 | Gene3D | Ribonuclease Inhibitor | 191 | 291 | IPR032675 | - | |
Vimu6g02682 | 1230 | ProSiteProfiles | Protein kinase domain profile. | 931 | 1213 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu6g02682 | 1230 | SUPERFAMILY | Protein kinase-like (PK-like) | 907 | 1205 | IPR011009 | - | |
Vimu6g02682 | 1230 | FunFam | MDIS1-interacting receptor like kinase 2 | 1012 | 1211 | - | - | |
Vimu6g02682 | 1230 | ProSitePatterns | Protein kinases ATP-binding region signature. | 937 | 959 | IPR017441 | GO:0005524 | |
Vimu6g02682 | 1230 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 390 | 482 | - | - | |
Vimu6g02682 | 1230 | FunFam | MDIS1-interacting receptor like kinase 2 | 31 | 192 | - | - | |
Vimu6g02682 | 1230 | Pfam | Leucine rich repeat | 761 | 816 | IPR001611 | GO:0005515 | |
Vimu6g02682 | 1230 | FunFam | MDIS1-interacting receptor like kinase 2 | 196 | 389 | - | - | |
Vimu6g02682 | 1230 | Gene3D | Ribonuclease Inhibitor | 292 | 388 | IPR032675 | - | |
Vimu6g02682 | 1230 | SUPERFAMILY | L domain-like | 564 | 828 | - | - | |
Vimu6g02682 | 1230 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1012 | 1216 | - | - | |
Vimu6g02682 | 1230 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 496 | 1207 | - | - | |
Vimu6g02682 | 1230 | SUPERFAMILY | RNI-like | 76 | 314 | - | - | |
Vimu6g02682 | 1230 | Gene3D | Phosphorylase Kinase; domain 1 | 892 | 1011 | - | - | |
Vimu6g02682 | 1230 | CDD | STKc_IRAK | 937 | 1205 | - | - | |
Vimu6g02682 | 1230 | Pfam | Leucine rich repeat N-terminal domain | 33 | 73 | IPR013210 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02682 | Vimu-Chr6 | 23417805 | 23421759 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g02682 | 13 | 652 | Receptor kinase-like Gene Family | AT4G08850 | 32.399 | 2.04e-82 | 290 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vimu6g02682 | Pkinase | 5.1e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02682 | - | - | pvu:PHAVU_001G163700g | 2021.9 |