Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02680 ATGTTGGACATCAGCAGCAACTTTCTTTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAAGAGCATTGGAGATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATCTGTTGATTTTTCTTACAACAAACTGAGTGGTTCAATCCCCACGGGCCGTGTTTTCGAAACTGCGACTGCCGAAGCCTACGCAGGAAACTCAGTTTGTGTATTAATTGGGATAATTAGTGTTGGAGCAATACTTCGCCGGCGGCATATCATAAAACACCCTGATGAAGAGTCCAAAAGCAATGAAAAAACTGATCCGCCTATGAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCGTTGGAAACGGAGGATTCGGAAGTGTTTATAGAGCACAATTACTCACAGGAAAATTGGAGCTAAGCTGGGCCAGAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGCTCCCCACAAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTTCGACTTTGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTCCTAAGCTCAGACACTTCAACGTGGACCTCAGTTGCTGGATCCTACGGTTACATGGCTCCAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGATACACTGTCTTCAAACAAGTATCTGTCATCAAAGGAGGGAGCACAAGTGCTACTGAAGGACGTGGTAGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCGCACGTGAGTTTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCATGATAACCATGAACAAGCTTAGAGGCTTCCAGAAGTAG 1095 0.4557 MLDISSNFLSGALPQNLEKLRALEILNVSHNHLSGTIPRSFSSMLSLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSVCVLIGIISVGAILRRRHIIKHPDEESKSNEKTDPPMSVVWGRDGKFTFSDLVKATNDFNDKYCVGNGGFGSVYRAQLLTGKLELSWARRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDFDFEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLDTLSSNKYLSSKEGAQVLLKDVVDQRLPPPTGQLAEAVVFTMTIALACAREFPESRPIMRAVAQELSATTQPYLSQPFSMITMNKLRGFQK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02680 364 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Vimu6g02680 364 SUPERFAMILY L domain-like 2 64 - -
Vimu6g02680 364 Pfam Protein kinase domain 164 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02680 364 ProSitePatterns Tyrosine protein kinases specific active-site signature. 191 203 IPR008266 GO:0004672|GO:0006468
Vimu6g02680 364 ProSiteProfiles Protein kinase domain profile. 52 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02680 364 Gene3D Transferase(Phosphotransferase) domain 1 154 350 - -
Vimu6g02680 364 SUPERFAMILY Protein kinase-like (PK-like) 115 339 IPR011009 -
Vimu6g02680 364 Pfam Leucine rich repeat 2 57 IPR001611 GO:0005515
Vimu6g02680 364 FunFam MDIS1-interacting receptor like kinase 2 149 345 - -
Vimu6g02680 364 PANTHER LEUCINE RICH REPEAT KINASE 2 161 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02680 Vimu-Chr6 23408639 23410304 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02680 2 66 Receptor kinase-like Gene Family AT1G72180 43.077 2.03e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g02680 Pkinase 1.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02680 - - qsa:O6P43_006856 436.802