Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02676 ATGTCGAAGAGAGGTCGCGGAGGATCGGCGGGGAACAAGTTTAGGATGTCACTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCCAAGAACCTCTACATCATATCAGTTAAGGGGATCAAGGGGAGGTTGAACCGGTTGCCTTCAGCGTGTGTTGGAGACATGGTTATGGCTACTGTCAAGAAGGGAAAGCCAGATCTCCGTAAGAAGGTGTTGCCGGCGGTCATCGTCCGTCAGCGCAAGCCATGGCGCCGAAAGGACGGCGTTTACATGTACTTCGAAGATAATGCCGGGGTTATCGTGAATCCCAAGGGTGAAATGAAAGTTCTCGAGCTGCTTGACACTCCTTGGTTGCAATTTGAATTTCGTTGTTTTTTGAATGTGTTTAGGTCTCGTTATGCAGTGTTACTTGTTGGTTTTAATGTGTTTGATTGTGTGTCGCTTGTATTTCTAGGTTCTGCTATTACTGGACCAATTGGAAAGGAGTGTGCCGATCTCTGGCCCAGGATTGCAAGTGCTGCCAATGCCATTGTTTAG 552 0.5018 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKVLELLDTPWLQFEFRCFLNVFRSRYAVLLVGFNVFDCVSLVFLGSAITGPIGKECADLWPRIASAANAIV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02676 183 SUPERFAMILY Ribosomal protein L14 11 113 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vimu6g02676 183 Pfam Ribosomal protein L14p/L23e 22 113 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vimu6g02676 183 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Vimu6g02676 183 Hamap 50S ribosomal protein L14 [rplN]. 19 183 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vimu6g02676 183 SMART Ribosomal_L14_2 19 183 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vimu6g02676 183 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 182 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vimu6g02676 183 Gene3D Ribosomal protein L14 1 118 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02676 Vimu-Chr6 23389455 23390229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02676 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 74.863 4.54e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02676 K02894 - gmx:100794110 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02676 6 23389455 23390229 Vimu6g02676 6 23389455 23390229 ECH