Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02675 ATGGCGCCGAATCCAAGAGTGATCGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAGTTACAGGGCTCTGGCTGATGCAATATTCGAGGAGGAAGAAAATAAGTTGCTGGAGCCTGACCAGAATAACAAAAACAAGAAGGATGGAGATGTGGACAATGAAGAAGCTCATATGCACGAGGAGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCTAACTAATCGTGGCCACAGCTTAGCTGCCTTTCCGTTGAAAACTCCAAAATTGGAAGATGGCATAGTGCCTGAAACTAGTTCCAGACTGCAGCCTCAAAGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCCCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGTTTACACCTAGAGGGGGAAGGTCTATGTCCGACTATACTTCCCTTGCAGAACCACTAAAAGAGTCAGCAGCTGAACCACGAGCTGCTCCGATGGCCGATAATAAAATGCTTGTTCCATTTACTTTGATCAAGCCCAAGGACGAGCCTGTTGATGATTTGCCAGCTTGTGAGATTCCCCTTGCTGTGATTCCTCCTGAACCATCAAGCGGAGGAGACTCTCTAATGGATGCAGCTGAAAAGCAAGATGACCACAATACCCTGGCATCACAATGCAACGATGAAGACGTTGAGCATGAATATATTATTTCTTCCTCAATTGAAGAACGAACTTCAAATGTAGATGTAGCATTGCCATCTATGGGAGAGGAACAATGTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCCGAGACCAATGTCTCACCTAGCGTGAGAGGAAATAAAGATCCAGTCACTGAAAACGAAATCAGTGTTAGGTCTTCTTCAGCCTTGGCTGAACCTGAAGTTCCTAGTTCTCTATGCTGCCTAAGTGATCAAGATGGTGCTGTACTAGCTTCCAAGAAGGTTAGGACTAATGGTTTCTTACATAGTAATGGTGGGAAGGAGCCAGAGGATCCTATGTCTACAAATTCAGCTACCTTAGTGGTTGTTCCAAAATGTGAATTTACGACTGAAAATGATGCAAGGGCTGTTCACGATGTTAATGACCTGGCAAAGGGTGAAGAAACAGTAAATATTTCATGGGTGAATAACACTACTAGTGATCTTCCGCCACCCTTTCACTACATACCCCAAAACCTTGTCTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAACTTGTAAGGGAAATTGCGTATTGTCATCTAAACCATGTCATTGTACAAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGATTTCTTGGAAGAGTGTATTGCCATTAACCGTGATTCCAAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACCTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGTAAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTCTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACCTTTGTATGTGAGTTTGTTGGGGAAATTTTAACTGTCACAGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATACACATTTCCAGTTTTATTGGATGCAGATTGGGACTTAGGAGATGTGAAGGATAGGGAAGCTCTTTGTTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGCTTGGATGCAAATTTAATTCAGATCCCAGTCGAAGTCGAGTGCCCAACTCATCAGTACTATCATTTTGCGTTCTTTGCAACCAGAAAAATAGCAGCACAGGAAGAACTCACTTGGGATTATGGCATCAACTTTGATGATCTCGATGAGTCTGTTGAGCTTTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCACATAGTTAG 2190 0.4251 MAPNPRVIAAFSAMANLGIHESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEEENKLLEPDQNNKNKKDGDVDNEEAHMHEEPLRPLKRLRLRGQEGQSSRPLTNRGHSLAAFPLKTPKLEDGIVPETSSRLQPQSSAALSDGNARNDAPHVPPQDAIVNRGKQPVSPQFTPRGGRSMSDYTSLAEPLKESAAEPRAAPMADNKMLVPFTLIKPKDEPVDDLPACEIPLAVIPPEPSSGGDSLMDAAEKQDDHNTLASQCNDEDVEHEYIISSSIEERTSNVDVALPSMGEEQCVKITQTDDVSKESETNVSPSVRGNKDPVTENEISVRSSSALAEPEVPSSLCCLSDQDGAVLASKKVRTNGFLHSNGGKEPEDPMSTNSATLVVVPKCEFTTENDARAVHDVNDLAKGEETVNISWVNNTTSDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSTCKGNCVLSSKPCHCTNKTGGEFAFTAHGLLKEDFLEECIAINRDSKNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCVKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTVTELHERNMKNPKGGKYTFPVLLDADWDLGDVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHQYYHFAFFATRKIAAQEELTWDYGINFDDLDESVELFQCRCGSKFCRNIKRSHS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02675 729 SMART preset_2 410 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g02675 729 Gene3D - 1 60 IPR043017 -
Vimu6g02675 729 MobiDBLite consensus disorder prediction 305 330 - -
Vimu6g02675 729 SUPERFAMILY SET domain 420 722 IPR046341 -
Vimu6g02675 729 ProSiteProfiles SET domain profile. 566 699 IPR001214 GO:0005515
Vimu6g02675 729 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 728 - -
Vimu6g02675 729 MobiDBLite consensus disorder prediction 61 190 - -
Vimu6g02675 729 ProSiteProfiles Pre-SET domain profile. 462 563 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g02675 729 SMART set_7 566 705 IPR001214 GO:0005515
Vimu6g02675 729 MobiDBLite consensus disorder prediction 309 330 - -
Vimu6g02675 729 Pfam SET domain 578 699 IPR001214 GO:0005515
Vimu6g02675 729 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 727 IPR025776 -
Vimu6g02675 729 MobiDBLite consensus disorder prediction 61 100 - -
Vimu6g02675 729 CDD SET_SETDB-like 434 699 - -
Vimu6g02675 729 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Vimu6g02675 729 Pfam Pre-SET motif 414 558 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g02675 729 MobiDBLite consensus disorder prediction 133 148 - -
Vimu6g02675 729 Gene3D SET domain 413 724 IPR046341 -
Vimu6g02675 729 MobiDBLite consensus disorder prediction 167 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02675 Vimu-Chr6 23375542 23383179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02675 412 722 Su(var)3-9 homologs AT5G04940 28.182 2.76e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu6g02675 Pre-SET 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02675 - - var:108323268 1323.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02675 6 23375542 23383179 Vimu6g02675 6 23375542 23383179 ECH
Vimu6g02675 6 23375542 23383179 Vimu3g00689 3 7544860 7547786 PCT