Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02660 ATGAAGTTCTTAAGGGATCAAAGGCTGATATGGGAGGAACAAAATAAGTGGATCTCCGAGTTGCTTGGGTATAACTTCAAAATTAAACCAGGAAAGAAAAGTATAGCAGCTGATGCCCTTTCTAGAAGAATGCAATATTCAGCCATCCACACAGTCAAATTCTCGGAGTGGGAAGATCTTCAGGCAGAAATTAAGCAGGATGAAAGGTTGAAGCAGATAATCCAAGACCTAGCAGTGAATAATGGAGAGCATCAAGGGTACAAAATAAACCAGGGCAGGTTGTACTATCAAGGTCGGTTGGTTATTCCAAAGGGGTCCCTTAAAATCAATTCAATCCTGAGGGAATTTCATGATTCAGCTAACATACAAAAGTACGTGAAGAAATGTGAGGTATGTCAAATAAACAAGTATCCAACCCTCAGTCCTGCAAGGCTGCTGCAACCCCTACCCGTTCCAAAGCAGATTTGGGCAGATATCTCAATGTATTTTATTGGAGGGTTACCAAAATCCGGTGGCAAGGATGGTCATACCAAGGAAGTTGCTAAGCTGTTCCTGAAGGAAGTGTTAAAGCTTCACGGGTTTTCTAAGTTGATTGTGTCAGATAGGGACAAGGTCTTCATGAGCTCTTTCTGGACTGAGTTATTCAAGCTAGCAGGAACCAAATTAAAACGGCAGACTGAAGTGGTGAATGGTTGTCTTGAAACATATCTGATGTGCATGACAGGACTGACACCATTCAAGGCTTTATATGGAAGAGACCCTCCTCCAGTAGTTCGAGGTGATGTACCAGCAACCCCTATGGAAGAGGTGGCTGTAATGTTGAAGCCAACAAAAATAGAAGGGAAGTGGAGTATAAAGGGGGATGGTATACTTGAAATACATCCCTATAAGTTGAAGACATTGGCTAAGAGAGTGAATCAAAAGCTCAACCCAAGGTACTACGGTCATTATGAGATCATGGAAAGAATTGGAGCGGAGTTCACCCTGGTGGCTGATGACATTGTTGTCCAGCAACTATACCCTTTTATGACTGAAGAATTGGAGCTCGAAGTCCAACCAGAAAAAGTCTTACCAACCATGGAAGTGTTAGTGAAGTGGAAGAGTCTTCCAGCTTGTGAAAATTCGTGGGAACCTCTGCACAAGATGATGGAATCGTTTCCTGAACTTCACCTTGAGGACAAGGTGAATTTTCAAGGGGTAGGTGTTGATACAAATGAAGGAGAAGGAGTGCAAGGGCAGAGGAGGAAAATCCACCAGGTTTATGAGAGGAAGAAGTGGAAACCCATCACTTGGGGGCCCACATGCACGAGAGAAGGAATAAAGGGAGTGAGGGGACCTGGGAACTTTCGGAGGGCAGATAGACTTACATTCTCTCTGATTTTGGCACTTGACAAGTCTCAGCTTGGAGAGGTCATCCGTGACAAAGGACAACAGCTTGATACACCAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCACTGCTGCAGCAGTCAAGAATACTAGTACTGGATGAAGCAACAGCATCAGTTGATACCGCCACAGATAATCTTATTCAGAAGATCATCCGAAGTGAATTCAAGGCCTGCACTGTGTGCACCATTGCACATCGTATACCTACTGTCATCGACAGTGATCAAGTTCTTGTGCTAAGTGATGGTCGAGTTGCAGAGTATGACACGCCTACAAGACTATTAGAGGACAAGTCTTCCATGTTTCTGAAGTTGGTGACTGAGTATTCATCACGTTCGAGTGGTATACCAGAATTTTAG 1770 0.4407 MKFLRDQRLIWEEQNKWISELLGYNFKIKPGKKSIAADALSRRMQYSAIHTVKFSEWEDLQAEIKQDERLKQIIQDLAVNNGEHQGYKINQGRLYYQGRLVIPKGSLKINSILREFHDSANIQKYVKKCEVCQINKYPTLSPARLLQPLPVPKQIWADISMYFIGGLPKSGGKDGHTKEVAKLFLKEVLKLHGFSKLIVSDRDKVFMSSFWTELFKLAGTKLKRQTEVVNGCLETYLMCMTGLTPFKALYGRDPPPVVRGDVPATPMEEVAVMLKPTKIEGKWSIKGDGILEIHPYKLKTLAKRVNQKLNPRYYGHYEIMERIGAEFTLVADDIVVQQLYPFMTEELELEVQPEKVLPTMEVLVKWKSLPACENSWEPLHKMMESFPELHLEDKVNFQGVGVDTNEGEGVQGQRRKIHQVYERKKWKPITWGPTCTREGIKGVRGPGNFRRADRLTFSLILALDKSQLGEVIRDKGQQLDTPGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKACTVCTIAHRIPTVIDSDQVLVLSDGRVAEYDTPTRLLEDKSSMFLKLVTEYSSRSSGIPEF 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02660 589 ProSiteProfiles Chromo and chromo shadow domain profile. 342 389 IPR000953 -
Vimu6g02660 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 573 IPR027417 -
Vimu6g02660 589 SUPERFAMILY Ribonuclease H-like 148 245 IPR012337 -
Vimu6g02660 589 Gene3D - 445 579 IPR027417 -
Vimu6g02660 589 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 482 580 - -
Vimu6g02660 589 SUPERFAMILY Chromo domain-like 339 389 IPR016197 -
Vimu6g02660 589 Gene3D - 146 270 IPR036397 GO:0003676
Vimu6g02660 589 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 274 577 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02660 Vimu-Chr6 23288151 23290743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02660 466 576 Calmodulin-binding Proteins AT2G36910 35.714 1.05e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02660 - - sot:102595311 328.946