Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02658 ATGGCCGTCGATGAAATTGGAATCTCTTCTCCGACGTCGTTTTCTTATTCTTCTTCTTCTTCGGGATCGTTTGAGAGTCTATGGAGTGCGATCCTTGGATTGCCTTGGGTGGAAGTGGTAGCAATCTGTGCAAACTTGACACTGTTTATTGTGTTTGTGTTCGTTCTTTTGGCGAGGAGGGTGGTTGTGTGTTTAGGGGGTGGAGTTAGATTTGGTAAGGACAATGGAACCGGCAATGCCAGCCGCGGCCTTGATAGTGTTGATTTAGAAACACGTGACGTTCGGATTGGAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTTTGTTGGTGCAAGTTTTGGTGTTGGGGTTCGATGGGTTTGCCTTGATTAGAGAAAGGGATGGGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTAGTGCAGGGTTTAGCTTGGGTTGCTCTTTGCTTCTCGGCTTTGCAGTGCAAGTTCAAGGCACGTGAGAGGTTTCCAAATTTGCTCAGAGTTTGGTGGTTTGTGTTATTTGTTGTTTGTTTGTGTGGTTTGTACGTTGATGGGAGAGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTTGCGGTCACTCCTGCTCTTGGCTTTTTGTGTATTGTTGCAATCAGGGGTGTTACTGGTGTAAAGATATGTAGGACTTCTGATGAGCAACAACCATTGCTTGTTGAGGAAGAACCGGGCTGTCTTAAGGTTACTCCCTATAATGATGCTGGACTTTTTAGCTTGGCCACTTTGTCTTGGTTGAATCCCCTTCTTTCCATTGGCGCAAAAAGGCCTCTTGAGCTTAAGGACATTCCCCTCGTTGCACCTAATGACCGATCCAAAACAAACTATAAGCTTGTGAATTCTAATTGGGAGAAATTGAAGGCAGAAAGCTCATCATCCGGGCAGCCTTCGTTAGCATGGGCGCTTCTCAAGTCATTTTGGAAGGAGGCGGCTTGTAATGCCATATTTGCTGGTGTAACCACTCTAGTTTCGTACGTTGGTCCATACATGATAAGTTATTTTGTTGATTTCTTAGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTTCTTGCAGGGATATTCTTTGCGGCTAAGCTTGTGGAGACCATGACTACCAGGCAGTGGTATCTAGGGGTGGACATCATGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGTTTAAGGATATCAAGTTTGGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTATTGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTCCATGACATGTGGATGCTTCCTCTCCAGATTGTTCTTGCCCTGGCAATTTTGTATAAGAATGTTGGAATTGCCTCTATTGCAACGCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCCGTGGCCAGGATCCAAGAAGATTATCAAGACAGATTAATGGCTGCTAAGGATGAGAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAAGACAGATATAGAGTGAAACTGGAGGATATGCGCGGAGTAGAATTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTTATATTCTGGAGCTCTCCGATTTTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGTCAGCTGACTGCTGGGGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAAACAAAAGTTTCTCTTGATCGGTTATCTGGCTTCCTTCTGGAGGAAGAATTGCAGGAAGATGCAACTATTTCCTTGCCACAAGGCATAACTAACATTGCTATAGAAATTAAGGACGGTGTCTTCTGTTGGGACCTTTCATCTTCCAGACCTACTCTATCAGGGATAAGTATGAAAGTTGAAAAAGGGATGCGCGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTTCTGTCTTGCATCCTTGGAGAAATTCCAAAGACTTCTGGGGAAGTCAGAGTGTGTGGATCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCAAGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACACGGTGATCAGACAATTATCGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGACGCTCACACTGGATCTGACTTGTTCAGGGATTATATATTGACAGCACTAGCAGATAAAACAGTCATTTATGTGACGCATCAAGTTGAATTTCTTCCGGCTGCTGATTTGATACTGGTGCTTAAAGAAGGCTGCATCATACAGGCAGGAAAGTATGACAATCTTTTACAAGCAGGAACAGATTTTAATACACTGGTTTCAGCCCACCATGAAGCCATAGAGGCTATGGATATCCCTGCTCACTCCTCTGAAGATTCAGATGAAAATTTATCTCTGGAAGCATCTGTTATGACCAGTAAGAAATCCATATGTTCTGCGAATGATATAGACAGTCTGGCAAAGGAAGTGCAAGAAGGAGCATCTACTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAGCAAAGCGATCGAGAAAGAAACAACTTGTTCAGGAAGAAGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTCTACTTGTCATACATGGCAGCCGCATATAAAGGCATGTTAATTCCTCTCATAATTATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTATACATGGCCCTTGCTTTTGGTAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGCCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATAGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACAATACAACTTATTGGTATTGTTGGGGTAATGACTGAAGTTACATGGCAAGTTTTACTGTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCATCCTCCAGGGAACTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAGTCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTCGCACGACCATTCTTTTGTAGTCTTTCTGCAATTGAGTGGCTTTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGCATGGTATTGCTTGTGAGTTTTCCTCGAGGAAGTATAGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTAAATTTAAATGCACGCTTGTCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCCATTGAGAGAATATATCAGTACAGCCAAATTCCTAGCGAAGCACCCACTATAATTGAAGATTCTCGCCCTCCATCCTCATGGCCAGAAAATGGGACAATCGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAACCTTCCTTTGGTGCTTCATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATCGGAATAGTTGGACGAACTGGCAGTGGAAAATCTACTTTAATTCAGGCACTATTTCGGTTGATTGAACCAACAAGTGGAAGTATCCTTATTGACAACATAAATATTTCTGAGATTGGCCTTCATGATCTTCGCAGCCATCTCAGTATCATCCCACAAGATCCAACTTTATTTGAAGGGACTATCAGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATTTGGGAGGTTGGTATTATTTCATAA 4218 0.431 MAVDEIGISSPTSFSYSSSSSGSFESLWSAILGLPWVEVVAICANLTLFIVFVFVLLARRVVVCLGGGVRFGKDNGTGNASRGLDSVDLETRDVRIGTWFKLSVLSCFYVLLVQVLVLGFDGFALIRERDGDLGLALLSVPLVQGLAWVALCFSALQCKFKARERFPNLLRVWWFVLFVVCLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALGFLCIVAIRGVTGVKICRTSDEQQPLLVEEEPGCLKVTPYNDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPNDRSKTNYKLVNSNWEKLKAESSSSGQPSLAWALLKSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDFLVGKEIFPHEGYVLAGIFFAAKLVETMTTRQWYLGVDIMGMHVRSALTAMVYRKGLRISSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEDMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATISLPQGITNIAIEIKDGVFCWDLSSSRPTLSGISMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKTSGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFRDYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDNLLQAGTDFNTLVSAHHEAIEAMDIPAHSSEDSDENLSLEASVMTSKKSICSANDIDSLAKEVQEGASTSDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGMLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEVGIIS 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02658 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02658 1405 Gene3D ABC transporter type 1, transmembrane domain 303 630 IPR036640 GO:0005524|GO:0016020
Vimu6g02658 1405 Gene3D ABC transporter type 1, transmembrane domain 934 1273 IPR036640 GO:0005524|GO:0016020
Vimu6g02658 1405 Pfam ABC transporter transmembrane region 337 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02658 1405 Pfam ABC transporter transmembrane region 975 1217 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02658 1405 Pfam ABC transporter 1309 1398 IPR003439 GO:0005524
Vimu6g02658 1405 Coils Coil 930 950 - -
Vimu6g02658 1405 FunFam ABC transporter C family member 5 936 1273 - -
Vimu6g02658 1405 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 255 1401 - -
Vimu6g02658 1405 CDD ABC_6TM_ABCC_D2 973 1267 IPR044726 GO:0140359
Vimu6g02658 1405 Gene3D - 645 877 IPR027417 -
Vimu6g02658 1405 Gene3D - 1275 1402 IPR027417 -
Vimu6g02658 1405 SUPERFAMILY ABC transporter transmembrane region 972 1272 IPR036640 GO:0005524|GO:0016020
Vimu6g02658 1405 Pfam ABC transporter 665 799 IPR003439 GO:0005524
Vimu6g02658 1405 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524|GO:0016887
Vimu6g02658 1405 FunFam ABC transporter C family member 5 632 879 - -
Vimu6g02658 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 975 1245 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g02658 1405 SUPERFAMILY ABC transporter transmembrane region 322 627 IPR036640 GO:0005524|GO:0016020
Vimu6g02658 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 870 IPR003439 GO:0005524
Vimu6g02658 1405 SMART AAA_5 674 855 IPR003593 GO:0016887
Vimu6g02658 1405 SMART AAA_5 1318 1397 IPR003593 GO:0016887
Vimu6g02658 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 869 IPR027417 -
Vimu6g02658 1405 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Vimu6g02658 1405 FunFam ATP binding cassette subfamily C member 5 1275 1384 - -
Vimu6g02658 1405 FunFam ABC transporter C family member 10 316 629 - -
Vimu6g02658 1405 CDD ABCC_MRP_domain1 647 846 - -
Vimu6g02658 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1283 1401 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02658 Vimu-Chr6 23278345 23284487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02658 647 863 Calmodulin-binding Proteins AT2G36910 31.356 2.15e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02658 - - gmx:100814850 2501.86