Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02651 ATGGAAGATGAACGCAGAGACAAAGACAAACACGCAACAAAATCTGACAACTCACCGACCCCATTAAAAGTTCTTATTGTAGATGATGATAAGGTTGTTCGAATGACTCACAAAATGCTGTTGGACAGAGTTGGGGTAAAAGATCACGTTGCTGTGGAAAATGGCAAAGAAGCGGTTGAACTTCACAACAATGGTCAAAGTTTTGACCTGATTCTCATGGACAAGGACATGCCAGTCATGAATGGAATTGAGGCGACAAGGACACTTCGTTCAATGGGCGTTAGTTGCAAGATCATTGGTGTGTCGACGTCAACCTCTAATCAGATATATGTACAAGAATTTGTTGAAGCAGGGCTGGATTACTTCTACACAAAACCCTTGACTGTTAAAATTCTTGGTGAAATTCTTGAGAAGATTAAGTCATGA 426 0.4061 MEDERRDKDKHATKSDNSPTPLKVLIVDDDKVVRMTHKMLLDRVGVKDHVAVENGKEAVELHNNGQSFDLILMDKDMPVMNGIEATRTLRSMGVSCKIIGVSTSTSNQIYVQEFVEAGLDYFYTKPLTVKILGEILEKIKS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02651 141 CDD REC_hyHK_CKI1_RcsC-like 24 136 - -
Vimu6g02651 141 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g02651 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 140 - -
Vimu6g02651 141 SMART REC_2 22 136 IPR001789 GO:0000160
Vimu6g02651 141 MobiDBLite consensus disorder prediction 1 16 - -
Vimu6g02651 141 ProSiteProfiles Response regulatory domain profile. 23 140 IPR001789 GO:0000160
Vimu6g02651 141 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Vimu6g02651 141 SUPERFAMILY CheY-like 20 139 IPR011006 -
Vimu6g02651 141 Gene3D - 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02651 Vimu-Chr6 23184765 23185350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02651 22 128 Response Regulator Gene Family AT3G04280 45.370 3.61e-25 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu6g02651 Response_reg 2.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02651 - - var:108322984 157.918