Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02650 ATGAACATTATGCTGACGAATGTCCTGGATGCCGCCACCGGTGGCATCTTCTTCTACGTGTTTGGCTTTGCCTTTGCTTTTGGCACCCCTTCCAACGGTTTCATTGGGAAACATTTCTTTGGCCTCGATAAGATTCCGTCGTCGGGTTTTGACTACGGGTACTTTCTCTTTCAATGGGCTTTTGCCATTGCTGCCGCGGGGATTACAAGTGGTTCCATCGCGGAGAGAACACAGTTTGTGGCTTATTTGATTTACTCATCGGTTTTGACTGGTTTGGTGTACCCTATTGTGGCGCATTGGTTTTGGTGTTCTGATGGGTGGGGTAGTGCTGCGAGAGGGGAGGGTTTGTTGTTTGGATCAGGGGTTATTGATTTTGCTGGGTCTGGTGTTGTTCATTTGGTCGGTGCTGTTGCTGGGTTATGGGGTGCTTTGATTGAAGGCCCTAGAATTGGGAGGTTTGATCATAGTGGAAAGGCTGTGCCAATGAAAGGACACAGTGGAACGTTGGTTGTTTTGGGGACTTTTTTGTTGTGGTTTGGATGGTATGGTTTCAATCCTGGTTCGTTTCTGAATATTTTGAAGGCAACTCTTGCTGGATGTTCAGCAGCACTGACAACACTGTTTGCGAAACGTATGCAAACGGGACATTGGAATGTGACTGATGTGTGCAATGGTTTGCTTGGAGGGTTTGCTGCTGTTACTGGAGGGTGTGCAGTGGTGGATCCTTGGGCGGCGATCATATGTGGGTTTGTAGCTGCTTGGGTGCTCATTGGTTTCAACATGCTTGCTGAGAAGTTGAAGTATGATGACCCTCTTGAAGCTGCACAACTTCATGGCGGGTGTGGCACATGGGGGATTATCTTCACTGCTTTGTTTGCTAAGAAGGAGTATGTGGATGAGGTTTATCCAGGACTACCTAGTAGACCTTATGGGTTGTTCATGGGAGGAGGTGCAAGGTTGTTGGCTGCACATGTTGTTCAGATTTTGTCCATCATTGCTTGGGTGAGTGTCACAATGGGAACAGTGTTCTTTGTGCTGTTGAAACTGGACCTGCTGAGGATATCTCACGATGAGGAGATGGCGGGGTTGGATTTAACCAGCCATGGAGGAATGGCATATGAGTATCACGAAAAGAATGGAAGAAATCCGGTATTTCAAGCAACTGTTTGA 1170 0.4735 MNIMLTNVLDAATGGIFFYVFGFAFAFGTPSNGFIGKHFFGLDKIPSSGFDYGYFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVAHWFWCSDGWGSAARGEGLLFGSGVIDFAGSGVVHLVGAVAGLWGALIEGPRIGRFDHSGKAVPMKGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKATLAGCSAALTTLFAKRMQTGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAIICGFVAAWVLIGFNMLAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKEYVDEVYPGLPSRPYGLFMGGGARLLAAHVVQILSIIAWVSVTMGTVFFVLLKLDLLRISHDEEMAGLDLTSHGGMAYEYHEKNGRNPVFQATV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02650 389 ProSitePatterns Ammonium transporters signature. 124 149 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu6g02650 389 Pfam Ammonium Transporter Family 1 373 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu6g02650 389 Gene3D Ammonium transporter AmtB like domains 1 388 IPR029020 -
Vimu6g02650 389 PANTHER AMMONIUM TRANSPORTER 1 369 - -
Vimu6g02650 389 FunFam Ammonium transporter 1 387 - -
Vimu6g02650 389 NCBIfam ammonium transporter 1 373 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu6g02650 389 SUPERFAMILY Ammonium transporter 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02650 Vimu-Chr6 23181378 23182610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02650 1 386 Inorganic Solute Cotransporters AT4G13510 68.550 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02650 K03320 - tcc:18613033 622.083