Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02639 ATGGCTGCTACTGCCAATCCTATAGTTGGGACCCAGATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGACGGTGAGGTCTTGGAGGTTAAAGGAGAAGTAATTAAAGTCCTTTGTTCTTCAGGGAAGACGGTTGTTATTGAAGCTTCCAGTATTTATCATAAAGATGCCGAAGTTCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATTTTGATTGCTGTGAACCCTTTCATAAAACTCCCTCATTTATATGACAGCCATATGATGGCCCAATATAAGGGAGCAGCTTTTGGCGAGCTAAGTCCACACCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAATCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGCTACTCATGAGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGAAGGTAGAACTATCGAGCAAAAGGTCCTGGAGTCCAATCCTGTTTTAGAAGCCTTTGGCAATGCGAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGCGGAAGAATATCAGGGGCTGCTATCAGGACTTATCTGCTTGAAAGGTCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCCCCTCCTGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTAGAGGGGCTTGATGAATCTAAGGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATTTTTAAAGTTGTCGCAGCAATTTTACATCTTGGGAACATCGAATTTAAGAAAGGGAAGGAGGTAGACTCATCTTTGCCCAGAGATGAAAAATCTTGGTTCCATCTAGAGACTGCTGCTGAGCTTTTCATGTGTGATGTAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTAGAGATGAAACAATTACAAAATGGCTCGATCCAGAAGCTGCTGCACTCAGTCGAGATGCCTTGGCTAAGATTGTGTACTCAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATTGGGCAAGACCCAGAGTCAAAATCCTTAATTGGTGTGCTGGACATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCCACACATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCTAAATTGTCACGTAGTGACTTTACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAACAAAGATTATGTGGTTGCAGAGCACCAGGCACTTCTTTGTGCTTCAAAATGCCCCTTTGTATCGGGTCTGTTTCCTCCTTCACCTGAGGAATCTTCAAAACAATCAAAGTTCTCCTCCATTGGCTCACGATTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTCAGTTCCACTGAGCCACATTACATTCGTTGTGTAAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTGCGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCCGGGTATCCTACAAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTAACTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGTTGTCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAGGTCAGCAAGCATCATTCAGAGAAAAGTTCTGTCATATTTGCAACGCAGAAGTTTCATATTGCTTCGTCTGTCGGCTCTGAGGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTGTATGAGGAAATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGGTGCTTCCGCATGCATATTGCTAGGAAGGCATACAATGATTTGTATGCTACTGCTGTCACTGTCCAGACTGGTATGAGGGGAATGGCTGCGCGTAGTGAGCTATACTTTAGAAGGAGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCAGAAATACTTGGCACAACTTCATTTCACCGAACTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTAGGCAAGAGTTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAAAACAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAAGAAGCAAGAGCTCAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTACTTCTTGAAAAGGAGAAAGAGGCTACAAAAATAGCAGCAGAGAGAGCTCCCGTTATACAGGAGATTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAAGTTCGAAGAGGCTAGCAAAATTGGTGAAGAAAGGTTAAAGCAAGCTTTGGATGCGGAATCAAAAGTAATCCAGTTGAAGACAGCTATGCAAAGGCTTGAAGAGAAATTCATTGACATGGAATCTGCAAACCATATTCTTCAGAAACAGTCACTACTAAACTCATCTGTGAAAACTATAGCAGAACACCTGTCTTCCCCAGTGGACGAGAAATTAGGAAATGGTCACCATGTGGCAGAAGAGCTGAAAGCTGTTGATACATATGTTACGCCTGTGAAACAATTTGGTACAGAATCTGACTTCAAACTGAGGAGATCTTACATTGAACGACAACATGAGAGTGTTGATTCACTTGTTAACTGTGTTATGAAAAATATTGGCTTCAGTCATGGAAAACCCATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCTTTTGAAGCTGAAAGAACCAGTGTATTTGATCGCCTGATTCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGCAATGATCATATGGCCTACTGGCTGTCGAATACATCTGCGCTACTGTTTTTACTTGAACAAAGTCTTAAATCTGGGAGTTCAACAAATGCTACCCCAGTTAGAAAACCACCTAATCCAACATCTCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATCCGATGTTGTGCGCAAGGTAGAAGCTAAGTACCCTGCCTTGCTTTTCAAGCAGCAGTTGACAGCGTATTTGGAGAAAATATATGGCATCATTAGGGATAATTTGAAGAAGGATTTAACTGCGGTCCTTGCATTATGCATCCAGGCACCAAGAACATCAAAGGGAGGGTTACGTTCTGGCCGATCCTTAGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTACTATTGAATCCCTAAATACCCTCCTCTGTACATTGAAAGAGAACTTTGTGCCACCAGTTCTTATTCAAAAGATCTTCAGTCAGACATTCTCATATATTAATGTGCAACTTTTCAATAGTCTTCTTCTTCGACGTGATTGTTGTACATTCAGCAACGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCATGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTAAGGGTTTACCATTTGATAGTTTATAACCTTTTCACGGTTTTAATCTGTCGGGGTAGTGGGCAAAGGCTTTCTAAAGCAAAGCCTTTTATTCCGTTATGGAGAAGCCCAAGCGTAGTTGCAAAACAAGTAGAAGGGTGCAGCAAATCAAGTGCAGTCGCCAAACTAGTCACCAAGCTAGAAGAAGGGCACAACAAACCAAGTGCAGCTGCCAAAAGCAGCAAAGCAAAATCCAATGGCATGGCCAAAAATCCATTGGATGTAGCTGATGTTGTTGAGCAGAATAGATTTGAAAACGTTATTCATCAGAAGTACAGGATTTCCTACGATGAAATCATCAACGATTTATGTCCCCTGAGTGGTGATAGTGGAAATCGCACTTGGCTTGTCTATGGATTCAATTGTCTGTTTCTTCTAGTAGCTGTTGACATGGTTGCCCAGTTTGTTAGTTTGTGCAAACCTGGGGAGAGAATGAGGTTACTTATCTTGAGTGTTCAACAGCTATACAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTGCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCTAGCATCCCCTTCTCAGTGGATGATCTTTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCAGCGGATGAGCTTCTAGAAAATCCAGCCTTCCAATTTTTGAATGAGTAG 4962 0.4111 MAATANPIVGTQIWVEDPDVAWIDGEVLEVKGEVIKVLCSSGKTVVIEASSIYHKDAEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTIEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGLDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFKKGKEVDSSLPRDEKSWFHLETAAELFMCDVKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLCASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKRILKNVGLEGCQIGKTKVFLRAGQMAELDTRRSEILGRSASIIQRKVLSYLQRRSFILLRLSALRIQAACRGQLARQVYEEMRQEASSLVIQRCFRMHIARKAYNDLYATAVTVQTGMRGMAARSELYFRRRTKAAIVIQSHCQKYLAQLHFTELKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKSKLEKQVEDLTLRLQLEKRLRVDMEEARAQENQRLQSALQEMQLQFKETKLLLEKEKEATKIAAERAPVIQEIPVVDHALLEKLSSENEKLKNMVSSLEKKIDETEKKFEEASKIGEERLKQALDAESKVIQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPVDEKLGNGHHVAEELKAVDTYVTPVKQFGTESDFKLRRSYIERQHESVDSLVNCVMKNIGFSHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSTNATPVRKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTAVLALCIQAPRTSKGGLRSGRSLAKDSPMVHWQSTIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVRVYHLIVYNLFTVLICRGSGQRLSKAKPFIPLWRSPSVVAKQVEGCSKSSAVAKLVTKLEEGHNKPSAAAKSSKAKSNGMAKNPLDVADVVEQNRFENVIHQKYRISYDEIINDLCPLSGDSGNRTWLVYGFNCLFLLVAVDMVAQFVSLCKPGERMRLLILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE 1653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02639 1653 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 ProSiteProfiles Dilute domain profile. 1156 1462 IPR002710 -
Vimu6g02639 1653 FunFam Myosin heavy chain 252 307 - -
Vimu6g02639 1653 CDD MYSc_Myo11 76 720 IPR036018 -
Vimu6g02639 1653 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 SMART iq_5 853 875 IPR000048 GO:0005515
Vimu6g02639 1653 SMART iq_5 734 756 IPR000048 GO:0005515
Vimu6g02639 1653 SMART iq_5 782 804 IPR000048 GO:0005515
Vimu6g02639 1653 SMART iq_5 757 779 IPR000048 GO:0005515
Vimu6g02639 1653 SMART iq_5 830 852 IPR000048 GO:0005515
Vimu6g02639 1653 Coils Coil 1014 1048 - -
Vimu6g02639 1653 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vimu6g02639 1653 FunFam Class V myosin 439 578 - -
Vimu6g02639 1653 FunFam Myosin 2 312 430 - -
Vimu6g02639 1653 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 FunFam unconventional myosin-Va 833 881 - -
Vimu6g02639 1653 Gene3D - 439 623 - -
Vimu6g02639 1653 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vimu6g02639 1653 Coils Coil 972 1006 - -
Vimu6g02639 1653 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vimu6g02639 1653 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vimu6g02639 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 883 IPR027417 -
Vimu6g02639 1653 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Vimu6g02639 1653 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Vimu6g02639 1653 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Vimu6g02639 1653 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Vimu6g02639 1653 Gene3D - 666 733 - -
Vimu6g02639 1653 Gene3D - 833 882 - -
Vimu6g02639 1653 Gene3D - 735 784 - -
Vimu6g02639 1653 Gene3D - 785 832 - -
Vimu6g02639 1653 Coils Coil 891 950 - -
Vimu6g02639 1653 PANTHER MYOSIN 58 1587 - -
Vimu6g02639 1653 SMART DIL_2 1332 1433 IPR002710 -
Vimu6g02639 1653 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 Gene3D - 252 310 - -
Vimu6g02639 1653 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vimu6g02639 1653 CDD MyosinXI_CBD 1107 1622 IPR037975 GO:0007015
Vimu6g02639 1653 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu6g02639 1653 Pfam DIL domain 1333 1401 IPR002710 -
Vimu6g02639 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 785 IPR027417 -
Vimu6g02639 1653 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vimu6g02639 1653 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02639 Vimu-Chr6 23064289 23081928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02639 1500 1652 Myosins gene family AT5G43900 56.209 7.92e-36 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02639 K10357 - gmx:100795648 2570.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02639 6 23064289 23081928 Vimu6g02639 6 23064289 23081928 ECH
Vimu6g02639 6 23064289 23081928 Vimu3g02211 3 36813772 36829474 PCT