Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02634 ATGGCACGTAGAAACTTTGGGAGCCAGATAACAGCACTTGTTGTAGATGACAATGTAATGAACAGAAGGATTCATGAAAAGCTGTTGGAGAGTGCTGGAGTGAGAAATCATGAGGGAGTGGAAAATGGGAAAGTAGCAGTGGATATTCATTGCCATGGACGAAGATTCGACCTCATTCTCATGGACATGGACATGCCAATAATGAATGGCATTCAGGCAACAAAGGAACTTCGTTCCATGGGCATTCGGAGCATGATCGTTGGTGTCTCATCACGTTCTACGGAAACAGAAATACGAAAATTTATGGAATCAGGCTTGAATGACTACCATGAGAAACCATTGAACACTGCAAAGCTTAATTCAATTCTTGATAAGATGAACCCTAATTTTACTAATAAATGA 402 0.4055 MARRNFGSQITALVVDDNVMNRRIHEKLLESAGVRNHEGVENGKVAVDIHCHGRRFDLILMDMDMPIMNGIQATKELRSMGIRSMIVGVSSRSTETEIRKFMESGLNDYHEKPLNTAKLNSILDKMNPNFTNK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02634 133 Gene3D - 2 130 - -
Vimu6g02634 133 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Vimu6g02634 133 SMART REC_2 10 123 IPR001789 GO:0000160
Vimu6g02634 133 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Vimu6g02634 133 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Vimu6g02634 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 129 - -
Vimu6g02634 133 SUPERFAMILY CheY-like 8 126 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02634 Vimu-Chr6 22953162 22954206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02634 10 123 Response Regulator Gene Family AT3G04280 46.552 1.37e-26 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu6g02634 Response_reg 4.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02634 - - gmx:100794931 203.756