Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02632 ATGGACGGCAACAATCAATACCCCATTCTCACACCTTCAGGATTACCTCGCCAAAACAAACCCTTTGTTGCAGAGGACGACGTCATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAACCACCGTTCTCTCAGAAAACCGATGCCGTCGCCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAGGCCAGAGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTGCACTATCCAATCGACGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCTGATTTCCTCTACTCACCGCCCACCGTTAACAACAGCACCGCCATGCAAACTCTCGCCACGTCTCAGCTTACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGGGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCTCGAGGCACAACACGAGAGCCGCCGAGGAGAGCGTGAAGGCAGCCGCGAAGGAATCCACAGTGGTGGATTCTTGCGAGACGCCGGCCGCAACGGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGCGGAACCGAGGGAAGGAGGCGCCGGCGGTCCGGTGCCTTCGACGAGTGCCGGTAACGGAAGGAGCACGATGATGTGCGACGTGACTATGGCGTCGTCGCCTGGCAGTTCGAGTAGTAGCGGCGAGCGAGTTCAGGTGGCGTCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAAGCGGAGGAATGGGATTCTCAGAGCGAGCACTCCCCTTGCTGCTGCATTCATTTCGGTGCTGTGGCCGTGCGCTCTTCTGATACCGTCACTTTCACCGTCGCGGCTGCGCATGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGAGGATCAACATCTACAAAGAAATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATCGGAATGGGGGTTGGAATGGGTATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCAACAGCAGCGGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCACGTGTTCCTGCTCCCGATTCATCCAGAATGCAAGCAGAAAATCAGTCAGATAAAAATATGGTTGCAGCTGGTCCACCTGATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCATATGCAGTTTCAAGTAATTCAGAATCAGGCGATGAACCAACCAAATGTTGGCAAGCCCAGTACCAGTAGGGATAATCCAGAAAACCGTTAG 1599 0.5347 MDGNNQYPILTPSGLPRQNKPFVAEDDVMELLWHNGQVVMQSQNHRSLRKPMPSPRNSHDASAAGPSEAREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPGRLEPKTPNFAYFSRHNTRAAEESVKAAAKESTVVDSCETPAATAAAVSRVSETVRNAAEPREGGAGGPVPSTSAGNGRSTMMCDVTMASSPGSSSSSGERVQVASAEERKRKGREAEEWDSQSEHSPCCCIHFGAVAVRSSDTVTFTVAAAHDVDFESEAKKQVRGSTSTKKSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAIGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQAENQSDKNMVAAGPPDPNQSRLPNFTDPYQQYLGPHHMQFQVIQNQAMNQPNVGKPSTSRDNPENR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02632 532 PANTHER TRANSCRIPTION FACTOR PIF3 18 165 IPR044273 GO:0003700|GO:0006355
Vimu6g02632 532 MobiDBLite consensus disorder prediction 503 526 - -
Vimu6g02632 532 MobiDBLite consensus disorder prediction 198 274 - -
Vimu6g02632 532 Gene3D - 322 385 IPR036638 GO:0046983
Vimu6g02632 532 MobiDBLite consensus disorder prediction 42 68 - -
Vimu6g02632 532 MobiDBLite consensus disorder prediction 256 274 - -
Vimu6g02632 532 FunFam Basic helix-loop-helix transcription factor 322 385 - -
Vimu6g02632 532 Pfam Helix-loop-helix DNA-binding domain 331 377 IPR011598 GO:0046983
Vimu6g02632 532 SMART finulus 333 382 IPR011598 GO:0046983
Vimu6g02632 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Vimu6g02632 532 CDD bHLH_AtPIF_like 327 390 IPR047265 -
Vimu6g02632 532 MobiDBLite consensus disorder prediction 451 532 - -
Vimu6g02632 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 393 IPR036638 GO:0046983
Vimu6g02632 532 MobiDBLite consensus disorder prediction 225 255 - -
Vimu6g02632 532 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02632 Vimu-Chr6 22925478 22929076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02632 15 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.578 4.16e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g02632 HLH 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02632 - - gmx:100797225 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02632 6 22925478 22929076 Vimu6g02632 6 22925478 22929076 ECH