Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02624 ATGGTGCTCATGAAGATGCGTGAAATTGCTGAGGCTTACCTGGGTTCTACAGTGAAGAATGCTGTTGTTACCGTCCCTGCTTACTTCAATGATTCTCAGCGTCAAGCTACCAAGGATGCTGGCGTTATTGCTGGTCTCAATGTCATGCGTATTATCAATGAGCCTACTGCAGCTGCCATTGCATATGGTCTTGATAAGAAAGCATCAAGTGTGGGTGAGAAGAACGTTTTGATCTTTGATCTTGGTGGTGGGACATTCGATGTTTCTTTACTTACTATCGAGGAGGGCATCTTTGAGGTGAAAGCCACAGCTGGTGACACCCATCTTGGAGGGGAGGATTTTGATAACAGGATGGTGAACCACTTTGTGCAAGAGTTTAAGAGGAAGAACAAGAAGGACATAAGTGGAAACCCCAGAGCACTTAGAAGGTTGAGGACTGCTTGTGAGAGGGCAAAGAGAACCTTGTCATCTACTGCTCAGACTACCATTGAAATTGATTCTCTATACGAGGGAATCGATTTCTACTCCACCATTACTCGTGCCAGATTTGAGGAGCTCAATATGGACCTCTTCAGAAAATGTATGGAACCAGTGGAGAAGTGTTTGAGGGATGCTAAGATGGACAAAAGAAGCGTGGACGATGTTGTCCTTGTTGGTGGTTCTACCAGAATTCCCAAGGTTCAGCAACTACTCCAGGACTTCTTTAATGGAAAGGAGCTGTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCGGCTGTCCAGGCTGCGATCCTAAGTGGTGAAGGCAATGAGAAGGTTCAAGATCTTCTCCTTCTCGATGTTACTCCTCTATCTCTTGGGTTGGAGACCGCCGGAGGTGTGATGACTGTCCTGATCCCTAGGAACACTACAATTCCAACAAAGAAAGAACAGGTTTTCTCAACTTACTCTGATAACCAGCCTGGTGTGTTGATCCAGGTCTTTGAAGGTGAGAGAGCAAGGACCAGAGATAACAATTTATTGGGCAAGTTTGAACTTTCTGGCATTCCTCCTGCTCCCAGGGGTGTTCCACAAATTACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAACGTCTCTGCTGAAGATAAAACCACTGGCCAGAAAAACAAGATCACTATCACCAATGACAAGGGTAGGTTGTCGAAGGAAGACATTGAGAAGATGGTTCAAGAGGCTGAGAAATACAAATCCGAGGATGAAGAGCATAAGAAGAAGGTCGAGGCCAAGAACGCCTTGGAAAATTACGCTTACAATATGAGGAACACTGTGAAGGATGACAAAATTGGTGGCAAATTGGATCCTGCTGACAAGAAAAAGATTGAGGATGCAATTGAGCAAGCTATCCAATGGTTGGACAGCAACCAGCTTGCAGAGGCAGATGAGTTTGAGGATAAAATGAAGGAATTGGAAAGCGTCTGCAATCCTATCATTGCCAAAATGTACCAGGGTGGTGCCGGTCCAGACATGGGCGGTGCTCCTCCAGCAGAGGATGAATATACTCCTTCTGGTGGAAGTGGCGCTGGCCCCAAGATTGAGGAAGTCGACTAA 1581 0.4592 MVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDDKIGGKLDPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESVCNPIIAKMYQGGAGPDMGGAPPAEDEYTPSGGSGAGPKIEEVD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02624 526 Gene3D - 2 259 - -
Vimu6g02624 526 Gene3D Actin; Chain A, domain 4 110 193 - -
Vimu6g02624 526 ProSitePatterns Heat shock hsp70 proteins family signature 2. 78 91 IPR018181 -
Vimu6g02624 526 Gene3D - 67 241 - -
Vimu6g02624 526 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 418 499 IPR029048 -
Vimu6g02624 526 ProSitePatterns Heat shock hsp70 proteins family signature 3. 215 229 IPR018181 -
Vimu6g02624 526 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 266 420 IPR029047 -
Vimu6g02624 526 FunFam Heat shock 70 kDa 110 193 - -
Vimu6g02624 526 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 267 424 IPR029047 -
Vimu6g02624 526 MobiDBLite consensus disorder prediction 493 526 - -
Vimu6g02624 526 SUPERFAMILY Actin-like ATPase domain 1 66 IPR043129 -
Vimu6g02624 526 FunFam Endoplasmic reticulum chaperone BiP 1 73 - -
Vimu6g02624 526 FunFam Heat shock cognate 70 kDa protein 2 194 241 - -
Vimu6g02624 526 FunFam Heat shock 70 kDa protein 74 135 - -
Vimu6g02624 526 SUPERFAMILY Actin-like ATPase domain 73 263 IPR043129 -
Vimu6g02624 526 FunFam Heat shock 70 kDa protein 414 526 - -
Vimu6g02624 526 Gene3D - 421 494 IPR029048 -
Vimu6g02624 526 FunFam Heat shock 70 kDa 266 420 - -
Vimu6g02624 526 Pfam Hsp70 protein 1 493 IPR013126 GO:0005524|GO:0140662
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 271 290 - -
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 244 264 - -
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 21 41 - -
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 84 94 - -
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 352 368 - -
Vimu6g02624 526 PRINTS 70kDa heat shock protein signature 212 228 - -
Vimu6g02624 526 Coils Coil 396 416 - -
Vimu6g02624 526 PANTHER HEAT SHOCK PROTEIN 70KDA 1 458 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02624 Vimu-Chr6 22884207 22887486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02624 1 526 Calmodulin-binding Proteins AT3G12580 92.966 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02624 K03283 - gmx:100798307 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02624 6 22884207 22887486 Vimu3g01346 3 24843402 24843770 ECH
Vimu6g02624 6 22884207 22887486 Vimu6g02624 6 22884207 22887486 ECH
Vimu3g01346 3 24843402 24843770 Vimu6g02624 6 22884207 22887486 ECH
Vimu6g01243 6 12488024 12491394 Vimu6g02624 6 22884207 22887486 ECH
Vimu6g02624 6 22884207 22887486 Vimu6g01243 6 12488024 12491394 ECH
Vimu6g02624 6 22884207 22887486 Vimu3g01346 3 24843402 24843770 PCT