Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02621 ATGCCGTTGAATATAACATCCCACAAGACATCTTCTAATGGAGTGTGGCAAGGTGATAATCCTTTAGATTATGCCTTCCCACTCCTGATAGTTCAAATCACCTTAGTTCTCATCGTCACTCGCTCCCTCGCTTTACTTCTCAAACCTCTCCGACAACCCAAAGTCATTGCTGAGATTCTGGGTGGAGTTTTGCTGGGCCCATCGGTACTGGGAAGAAGCCAAAGTTATCTGCATCGTATATTCCCTTCATGGGGCACGCCAACGCTGGAATCTGTCGCAAGCATAGGTCTTCTTTTTTTCCTATTCCTCGTAGGTTTGGAGCTCGATCTCCATTCCATTCGTCGGAGCGGAAAAAGAGCCTTCAGCATCGCCGCCGTGGGGATCTCTCTTCCTTTCGTATGCGGAATCGGCGTCGCCGTCATCCTCCGCAAAACAGTTAAAGGCGCAGATGAACCCGGCTTCGCGCAGTTCATCGTCTTCATGGGCGTGGCACTTTCCATCACCGCATTCCCGGTGCTGGCCCGCATCCTTGCGGAGCTGAAGCTCCTCACCACGAGAGTGGGGGAGACCGCGATGGCGGCGGCGGCGTTCAATGACGTGGTCGCGTGGATTCTGCTCGCGTTGGCAGTGGCTTTGGCGGGGAATGGCAGTGGGTCCCAGAAGAGTCCTCTGGTATCGGTGTGGGTTCTTCTCTCGGGGCTGGCGTTCGTGGTTTTGATGATGGTGGCTGTCCGACCGGTGATGGAGGTTGTGGCTAGAAGGGGCGAAAACGACGCCGCTGACGAGTTTTATGTTTGTTTGACGCTAGCGGGGGTGTTGGTGTCGGGGTTTATGACGGACCTGATCGGGATTCACTCCATATTCGGGGCCTTCGTGTTTGGGCTAACGATCCCGAAGGAGGGAAACTTCGCGAAGAAGCTAACAGAGAGAATCGAGGATTTTGTTTTAGGTTTGTTGCTCCCACTCTACTTTGCTTCTAGCGGTTTGAAAACTGACGTAACTACCATACGTGGCGCTTCGGCGTGGGGTCTTCTGGTTCTGGTCATAGCCACGGCTTGTGCTGGGAAGATTCTTGGGACCTTCGCCGTGGCCATGTTCTGCATGATCCCCGCCAGAGAATCGCTCACACTTGGCGTCCTCATGAACACCAAAGGCCTCGTTGAGCTTATCGTACTCAACATTGGAAAGGAAAAAAAGGTTTTAAATGATGAAATGTTTGCAATCTTAGTTCTTATGGCTCTGTTCACCACCTTCATCACAACACCAATAGTAATGGCAATCTACAAACCAGCTCGAGGAAACTCAATGAAAGCCCGGCGAAAGCTCGGTGACGATTCTTTGGGGTCTGGGAAGGAAATGGTTGAGAAGCTCAGAGTCTTGGCCTGTCTCCATGGGCCAAGCAATATCCCTTCTGTCATCAATTTGATTGAATCAACTCGAAGCACAAAAAAGTCCTTGATAAAGTTGTTCATGATGCACCTTGTTGAGCTCACAGAACGCTCATCCTCTATCATCATGGTTCATCGTGCTCGTAGAAATGGTTTCCCATTCTTCAACCGCTCTCATCGTGACCAGTGGCATGACCGAATTGCAGGAGCCTTTCAAGCCTACACTCAACTAGGTCGAGTCATGGTTCGGTCCACAACTACTGTTTCTTCTCTTTCCACCATGCATGAGGACATATGCCACGTGGCGGAGGAGAAAATGGTCACCATGATTATTTTGCCCTTCCACAAACAGTGGAGAACAGAAGTGGATGGGGACAACGAGAAATATCAAGTGGAAGAAAATGCAGGCCACGAATGGAGAGTGGTGAACCAAAAGGTACTTAAGAATGCACCTTGTTCAGTGGTCGTGCTTGTGGATCGTGGATATGGAAATTTGCCTGAAACTTCAACCCCAGATTCCATTGTTTATCAACGAGTGTGCATCATCTTCTTCGGTGGCCCAGATGATCGTGAGGCTCTAGAGTTGGGGAAGAAGATGCTTGAACACCCAACAGTTAAAATACGTGTTGTAAGGTTTATGGAAAAGGGTGTGTTGGATGATAATAACATTGTGTTAAACTTCTCACCTGACAAAAACAAAGAGGATAGTTACAGCTTCTCCACAGCCAAAATGAATCGCCAGAGAGAAAAGGAGTTGGATGAGGAGGCAATTAAGCAGTTTCAAAGCAAGTTGAATGACATGGTGGAATACATTGAGAAGTTTAGTGAGGACGTTGTGGAAGACGTATTGATAATAGGAAAAAGTGGGGATTATGATCTGATAATTGTTGGAAAAGGTCGATTCCCATCGAATATGGTGGCTGGATTAGCAGAAAGAAAACCAGAACATGCTGAATTAGGTCCTATTGGAGATGTTTTATCTTCATCAGAACATGAGGTTTTGTCATCTGTATTGGTTATTCAACAACACGATGTGACATTGGTAGATGATGCTCCTATATGCAAGGTCCATGATGAATTAGGTATCATTATTGATTTACGGTGGCTTGTGCGGTTGATAAGGATGAAGTTCACGGTTGTCTGA 2532 0.4787 MPLNITSHKTSSNGVWQGDNPLDYAFPLLIVQITLVLIVTRSLALLLKPLRQPKVIAEILGGVLLGPSVLGRSQSYLHRIFPSWGTPTLESVASIGLLFFLFLVGLELDLHSIRRSGKRAFSIAAVGISLPFVCGIGVAVILRKTVKGADEPGFAQFIVFMGVALSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVVAWILLALAVALAGNGSGSQKSPLVSVWVLLSGLAFVVLMMVAVRPVMEVVARRGENDAADEFYVCLTLAGVLVSGFMTDLIGIHSIFGAFVFGLTIPKEGNFAKKLTERIEDFVLGLLLPLYFASSGLKTDVTTIRGASAWGLLVLVIATACAGKILGTFAVAMFCMIPARESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEMFAILVLMALFTTFITTPIVMAIYKPARGNSMKARRKLGDDSLGSGKEMVEKLRVLACLHGPSNIPSVINLIESTRSTKKSLIKLFMMHLVELTERSSSIIMVHRARRNGFPFFNRSHRDQWHDRIAGAFQAYTQLGRVMVRSTTTVSSLSTMHEDICHVAEEKMVTMIILPFHKQWRTEVDGDNEKYQVEENAGHEWRVVNQKVLKNAPCSVVVLVDRGYGNLPETSTPDSIVYQRVCIIFFGGPDDREALELGKKMLEHPTVKIRVVRFMEKGVLDDNNIVLNFSPDKNKEDSYSFSTAKMNRQREKELDEEAIKQFQSKLNDMVEYIEKFSEDVVEDVLIIGKSGDYDLIIVGKGRFPSNMVAGLAERKPEHAELGPIGDVLSSSEHEVLSSVLVIQQHDVTLVDDAPICKVHDELGIIIDLRWLVRLIRMKFTVV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02621 843 Pfam Sodium/hydrogen exchanger family 36 423 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu6g02621 843 FunFam Cation/H(+) antiporter 15 28 434 - -
Vimu6g02621 843 Gene3D - 28 435 IPR038770 -
Vimu6g02621 843 PANTHER CATION/H + ANTIPORTER 7 807 - -
Vimu6g02621 843 Gene3D - 485 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02621 Vimu-Chr6 22815358 22825024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02621 75 828 Antiporter Super Family AT3G53720 64.499 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02621 K26731 - gmx:100798644 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02621 6 22815358 22825024 Vimu6g02621 6 22815358 22825024 ECH