Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02620 ATGGCTTCGCGGCGCCTCCGGGACCTCCAATCCCAAGCGGCGAATAAGATCTGCGTAGACTGTTCCCAGAAGAATCCGCAATGGGCTTCGGTGTCTTACGGAGTATTTATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGACTCGGGGTTCACATCTCCTTCGTTCGATCCGTTACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCCGGAGGCAACGACAAACTCAATGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCTGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGAGCATCCGCTCCTCCGCCTCCAAGGGGAAGCCGCCCCTTGCCACCGGCAACAACGGCGGCTGGGATAATTGGGACACGGACGACGGGTTCGGATCGGCTCGGGGAGGCTCTGATCTGCGGCGGAACCAGTCCACCGGCGATGTCAGGGGGTTTGGCGGCGGCGGGAGTGTGGCGAGGTCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTGGAAGCCTCTGCTGCCAATAAGGAAGATTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCGCGACCGGAGGGGCTTCCGCCATCGCAGGGTGGCAAGTACGTCGGGTTCGGATCTAGCCCCGCCCCGAGCCAAAGGGCTAATCAGCAAAGCGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGATAGGGGATGGGATCCTGTTATCTTGTTCAGCATTTCTTTTGTATGGGGATTGAGTCATGAGGTTTGGACTTTTTGGCATGTGTCATTGGGCCAAGGAGTTGTGTATATTGTAAATCTCATTCTATGGTTTGTTCTGTTCAAAGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTAAATGTTGTCTCTCAAAAGACATCAGAAATTGGACATAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACGCAAAAGGTTGAGGAATACACTAGAGATAGCCCCAATTCGACATCTGAAAAACAAAATGAAGCTGATAAAAACGGTTTCTATCAGGAGTATAATCGAGAGAACAAAGGCTGGAATTCTTCTACCAGAGAAGGGCAACAGTCTACGGGTGGACAAACTAATTCTTATCATTCAAGCTCTTGGGATGATTGGGGCCACAAAGATCCTAGGAAGGAACATCCTGTTAAAGGGTCGTCTCACCAGTCATCAGGTGGGCTATCTGATGCTTATAACTCTAGCTCTTGGGATGATTGGGACCATGAAGACGCAAGGAAGAAAGAAGCAGCTAAAGGATCAGCTTCCCATAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGATTTGATGATTTCTATGGAAATGCATCTAACAATAAAGCTGCTGGTCATAATGATAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCACTAA 1605 0.5153 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKESIRSSASKGKPPLATGNNGGWDNWDTDDGFGSARGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRAQLEASAANKEDFFARKRAENESRPEGLPPSQGGKYVGFGSSPAPSQRANQQSDYLSVVSQGFGKLSLVAASAAQSAANVVQAGTKEISAKDRGWDPVILFSISFVWGLSHEVWTFWHVSLGQGVVYIVNLILWFVLFKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDSPNSTSEKQNEADKNGFYQEYNRENKGWNSSTREGQQSTGGQTNSYHSSSWDDWGHKDPRKEHPVKGSSHQSSGGLSDAYNSSSWDDWDHEDARKKEAAKGSASHSSDGWAGWDNAKDDGFDDFYGNASNNKAAGHNDKAGVAWTGGGFH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02620 534 MobiDBLite consensus disorder prediction 117 192 - -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 407 534 - -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 435 451 - -
Vimu6g02620 534 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Vimu6g02620 534 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 380 399 - -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 380 396 - -
Vimu6g02620 534 CDD ArfGap_ArfGap1 2 116 - -
Vimu6g02620 534 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 468 486 - -
Vimu6g02620 534 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Vimu6g02620 534 MobiDBLite consensus disorder prediction 452 467 - -
Vimu6g02620 534 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Vimu6g02620 534 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Vimu6g02620 534 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Vimu6g02620 534 Pfam Putative GTPase activating protein for Arf 4 102 IPR001164 GO:0005096
Vimu6g02620 534 MobiDBLite consensus disorder prediction 407 434 - -
Vimu6g02620 534 MobiDBLite consensus disorder prediction 214 247 - -
Vimu6g02620 534 SUPERFAMILY ArfGap/RecO-like zinc finger 3 108 IPR037278 -
Vimu6g02620 534 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 452 534 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02620 Vimu-Chr6 22805307 22809230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02620 4 82 C2H2 Transcription Factor Family AT4G21160 51.250 8.57e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02620 K12492 - gmx:100778302 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02620 6 22805307 22809230 Vimu6g02620 6 22805307 22809230 ECH
Vimu6g02620 6 22805307 22809230 Vimu3g01350 3 24932901 24935764 PCT