Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02616 ATGACGTCGTTCTTAAAGCCCGAGAATGCTCTCAAAAGGGCGGAAGAGTTAATCAATGTTGGGCAGAAGCAGGATGCTCTACAGACTCTTCATGACCTCATTACTTCAAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTTAAGTATGTTGAACTTTGTGTTGACATGCGCAAAGGCCGGTTTGCAAAAGATGGGCTTATTCAGTATAGAATAATATGTCAACAAGTGAATGTTAGTTCACTGGAGGAGGTGATCAAACACTTTATGCACCTGTCAACTGAGAAAGCTGAACAAGCTCGGAGTCAAGCACAAGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGTTGAGTTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTCACCCCATGGTTTAAATTTCTTTGGGAAACTTACAGGACAGTGCTTGAGATATTGCGGAACAACTCAAAACTGGAAGCATTATACGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCAGACTGTGTGAAATCATAAGAAACCATTTGGCTAATCTCAACAAATACCGTGACCAACGAGACAGGCCCGACCTTTCAGCTCCTGAAAGCTTACAACTGTATCTTGATACTAGAGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTAGAGGATATTCATGGACTGATGTGCCTGGTCAAGAAAACTCCCAAGCCATCCTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCGTCAAGTCATCTTTATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAACTAATAGCTTCATCCGTTGTTCTTGCTGCACTTTCAGTGCCTCCTCATGACCGTACACACGGTGCGTCTCATTTGGAACTGGAGCATGAAAAAGAGAGAAATTTGAGAATGGCCAATCTCATTGGCTTCAATCTTGAGAGTAAACCTGAAAGCAGAGAAATGCTCTCAAGATCATCACTTCTTGCTGAACTGTTCATACTGGCTTCAATTGCAAGCCTGCTGTATTGCATAGGGTATATTGATGATGTATTTTGGAAGTTGAGTGGACTCTGGGCATCCAAGGGAGTGATGTCTTGTGTGACTCAGGAAGTGAAAGATGTTTACCATCTTTTGGAACATGAATTTCATCCCTCAGATCTTGCATTAAAAGCGCTGCCCTTGATAACTAAAATCTCAAAGTTAGGGGGGAAGCTTTCTACAGCTTCTTCTGTTCCAGAAGTACAGTTGTCTCAATATGTCCCATCACTGGAAAGACTAGCTACCATGAGGTTACTGCAGCAGGTGTCCAATGTTTATCAGACAATAAAGATTGAGACTTTATCTGGGATGATCCCGTTCTTTGACTTCTCTGTAGTTGAAAAGATCGCCGTAGATGCTGTAAAGCAGAAGTTTGTATCGATGAAAGTTGATCACATGAAAAATGTTGTGATCTTTTCCAAAACGAGTCTCGAGTCAGATGGCTTAAGGGATCACTTGGCCAATTTTGCTGAACAATTAAACAAGGCCCGACAAATGATTTATCCTCCTGATAGGAAACCATCTAAACTTGGTGCCTTACTTCCAACTTTGACAGAGGTTGTTGCCAAAGAACACAAGAGGCTTCTTGCCCGAAAATCAATCATTGAGAAGCGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGAGAGGAGGAGTCAAAAAGACTAAGACTTCAGAAAATAACTGAAGAAGCAGAACAAAGACGGCTTGCCACCGAGTATGAGCAGAGGAAAAATCAGAGGATCCTCAGGGAGATAGAAGAGAGGGAAATTGAAGAAGCCCAAGCTTTACTTCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATTATAGAGGGAGACAAAATGACCAAGCAGACCTTGATGGAGTTAACTTTGACTGAACAACTCCGGGAAAGACAGGAAATGGAAAAGAAGTTGCAGAAGTTAGCGAAAACAATGGATTATTTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTTATTGAAGCTGCGTATCAACAACGTTTAGTGGAAGAGAGGCTTCTTCATGAGCGTGAACAACAGCAAGAAGTTGAACTGAGCAAACAGAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGCTCGAATGATTGGCAATAAGGAGATATATCAGGTCCGAGTTGTTAGTCATCGCCAAGCAGAGTTTAATAGATTAAGAAGAGAACGGGAAGAGAGAATCTCTAGGATTTTGCAGTCAAGGAAACAGGAAAGGGAAAAGATGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAAGAGAGACAACAAAAGTTGCGTGAGGAGGAGGAAGCACGGAAACGTGAAGAGGCGGAAAGGAGAAAGAAGGAAGAGGCTGAACGTTTAGCGAAACTGGCCGAGATAGCTGAAAAACAGAGGCAGAGAGAGCGGGAACTCGAAGAAAAGGAGAGACAAAGAAAAGAAGCATTGTTAGGCAGAGCTGTTGAACCAGCTCCTCCTGCGCGTCAATCGGAACCCGTAACAGCTCCTGCTGCTGCAGCTCCAAACCCAGGGAAATACGTGCCTAAGTTCATGCGAGATAGAGCTGAAAGAACAGGCACTGCTCCTCCTCCGGAAACAGATCGCTGGGGTAACAGTAGCAGCAGGCCGGATGGTGACAGGTGGCGTGGTGATGATCGACGAAGTAGTTATGTTAGTGGTGGAGGTTCGAGGTCATCATCTTCTTGGTCCAGGAATCCGCGTTGA 2931 0.4343 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLESKPESREMLSRSSLLAELFILASIASLLYCIGYIDDVFWKLSGLWASKGVMSCVTQEVKDVYHLLEHEFHPSDLALKALPLITKISKLGGKLSTASSVPEVQLSQYVPSLERLATMRLLQQVSNVYQTIKIETLSGMIPFFDFSVVEKIAVDAVKQKFVSMKVDHMKNVVIFSKTSLESDGLRDHLANFAEQLNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKMTKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKQRHEGDLKEKERLARMIGNKEIYQVRVVSHRQAEFNRLRREREERISRILQSRKQEREKMRKLKYYLKLEEERQQKLREEEEARKREEAERRKKEEAERLAKLAEIAEKQRQRERELEEKERQRKEALLGRAVEPAPPARQSEPVTAPAAAAPNPGKYVPKFMRDRAERTGTAPPPETDRWGNSSSRPDGDRWRGDDRRSSYVSGGGSRSSSSWSRNPR 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02616 976 MobiDBLite consensus disorder prediction 830 886 - -
Vimu6g02616 976 ProSiteProfiles PCI domain profile. 316 540 IPR000717 -
Vimu6g02616 976 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852
Vimu6g02616 976 Coils Coil 823 884 - -
Vimu6g02616 976 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 969 IPR027512 GO:0005852
Vimu6g02616 976 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Vimu6g02616 976 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 468 559 IPR000717 -
Vimu6g02616 976 Gene3D - 269 342 - -
Vimu6g02616 976 Gene3D - 407 535 - -
Vimu6g02616 976 Pfam PCI domain 414 537 IPR000717 -
Vimu6g02616 976 Coils Coil 588 629 - -
Vimu6g02616 976 MobiDBLite consensus disorder prediction 830 976 - -
Vimu6g02616 976 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Vimu6g02616 976 MobiDBLite consensus disorder prediction 960 976 - -
Vimu6g02616 976 Coils Coil 694 724 - -
Vimu6g02616 976 MobiDBLite consensus disorder prediction 941 956 - -
Vimu6g02616 976 Coils Coil 642 676 - -
Vimu6g02616 976 Coils Coil 93 120 - -
Vimu6g02616 976 Gene3D UVR domain 217 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02616 1 976 Eukaryotic Initiation Factors Gene Family AT4G11420 70.829 0.0 1325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02616 K03254 - gmx:100782598 1437.94