Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02615 ATGGCTTTTATGTCTGGACTTCAGCGTCTACTTCGCCAATCCCCACTTCTTCATTCGCACCATGCTTCCATTCGTTTAGCTTCAACTCTCACCTCCCCCAAACTTTTCGTCAGCGGTCTCTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCATTCGGGCAGCTGGTGGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTAACCTATACAACCATAGAGGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACGGTCCCAACCCTCTGAATCAGGTTTTACTGTTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.4429 MAFMSGLQRLLRQSPLLHSHHASIRLASTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSRSQPSESGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02615 139 Gene3D - 21 133 IPR012677 -
Vimu6g02615 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Vimu6g02615 139 MobiDBLite consensus disorder prediction 109 139 - -
Vimu6g02615 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Vimu6g02615 139 SUPERFAMILY RNA-binding domain, RBD 31 131 IPR035979 GO:0003676
Vimu6g02615 139 PANTHER NUCLEOLAR PROTEIN 8 21 138 - -
Vimu6g02615 139 FunFam RNA binding protein 20 133 - -
Vimu6g02615 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02615 Vimu-Chr6 22764551 22766703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02615 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 1.01e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02615 - - gmx:100306326 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02615 6 22764551 22766703 Vimu6g02615 6 22764551 22766703 ECH