Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02606 ATGAATATGAAGAGACAGAGAGAAATTGAGGGGTTCGCAACTATTGATTTGGCAAATTGTCTAATGCTTCTATCATGCCCCCAACAAAATAAGTTACAGAGAAAACATGTTGAGGATGTGGAATTTGAGTGCAAGACATGCAAGCGAAAGTTCTCGTCTTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACAGCCTATAGGTCTAAGTTTGGGAATTAAGAAACCCAAAATGCACGAGTGTACCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGAGGCCACATGAGAAGACACAGAGCTTCCATTAATGGAGATTTTTCTTCAGTTAAACAGGTTGCAGAAGTACCCGTTTTGAAAAGATCAAGTAGCACGAGGGGTATGTGCATGGATTTGAACCTAACACCCTTAGAGAATGACTTCAAGTTATTGTTTGGAAAAACGCCACTCAATGTTGGTGCCCTAGTTTGA 513 0.4172 MNMKRQREIEGFATIDLANCLMLLSCPQQNKLQRKHVEDVEFECKTCKRKFSSFQALGGHRASHKRSKLEGDELKAQPIGLSLGIKKPKMHECTICGQEFSLGQALGGHMRRHRASINGDFSSVKQVAEVPVLKRSSSTRGMCMDLNLTPLENDFKLLFGKTPLNVGALV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02606 170 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vimu6g02606 170 SUPERFAMILY beta-beta-alpha zinc fingers 42 113 IPR036236 -
Vimu6g02606 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vimu6g02606 170 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vimu6g02606 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vimu6g02606 170 SMART c2h2final6 91 113 IPR013087 -
Vimu6g02606 170 SMART c2h2final6 42 64 IPR013087 -
Vimu6g02606 170 Pfam C2H2-type zinc finger 42 66 - -
Vimu6g02606 170 Pfam C2H2-type zinc finger 91 115 - -
Vimu6g02606 170 PANTHER ZINC FINGER PROTEIN ZAT5 13 153 - -
Vimu6g02606 170 Gene3D Classic Zinc Finger 39 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02606 Vimu-Chr6 22671809 22672321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02606 3 162 C2H2 Transcription Factor Family AT2G37430 48.235 5.41e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g02606 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02606 - - gmx:100806997 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02606 6 22671809 22672321 Vimu3g01384 3 26084952 26086081 PCT