Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g02605 | ATGGTAGCAATGAAGAGACAACGTGGTAACGAAGGATCGGAGAACTTAGATTTGGCAAAGTGTCTTATGCTGTTCTCTTGTCCTGAAGAAAGCAACAAGGTACAAGAAAAAGGTTTTGGATCTCTGGAATTTGAGTGCAAGACGTGCAACCGCAGGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCCTATGGAGCAAACCCAAAATGCACGAGTGTTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGTATCAGCAACGAAGGCTTTGTTCCTATTCCTTCCATCGACCAAGTTATTGCGAAATTCCCAGTTCTTAAAAGGTCCAACAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTCTAG | 468 | 0.4637 | MVAMKRQRGNEGSENLDLAKCLMLFSCPEESNKVQEKGFGSLEFECKTCNRRFSSFQALGGHRASHKRQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGISNEGFVPIPSIDQVIAKFPVLKRSNSTRVMCLDLELHL | 155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g02605 | 155 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
Vimu6g02605 | 155 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 119 | IPR013087 | - | |
Vimu6g02605 | 155 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
Vimu6g02605 | 155 | SMART | c2h2final6 | 44 | 66 | IPR013087 | - | |
Vimu6g02605 | 155 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 44 | 71 | IPR013087 | - | |
Vimu6g02605 | 155 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 46 | 66 | IPR013087 | - | |
Vimu6g02605 | 155 | Gene3D | Classic Zinc Finger | 42 | 114 | - | - | |
Vimu6g02605 | 155 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 10 | 153 | - | - | |
Vimu6g02605 | 155 | Pfam | C2H2-type zinc finger | 44 | 69 | - | - | |
Vimu6g02605 | 155 | Pfam | C2H2-type zinc finger | 92 | 116 | - | - | |
Vimu6g02605 | 155 | SUPERFAMILY | beta-beta-alpha zinc fingers | 44 | 114 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g02605 | Vimu-Chr6 | 22667375 | 22667842 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g02605 | 4 | 153 | C2H2 Transcription Factor Family | AT2G37430 | 45.963 | 5.92e-36 | 120 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vimu6g02605 | zf-C2H2_6 | 1.4e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g02605 | - | - | pvu:PHAVU_001G170800g | 301.597 |