LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02599	ATGGAGCTGATTAAGAGACATTTGTGGTGTCCCTACCAATTGAGCCAGCTCAAATGTCTATGTGGGCTAGAGTTTCCAATATTGCTGATTGGGTGTCATGACTTATGGGCAAACGTCCAACTAGTCAAGTTTGGTGTTGAGACTTGGCTAGGTCGGTGCATGGTGCCAAGATTTGGGAAATTTTCAAAGTGTTGGTTTTTGAGATTTGATGGTTGGAATGCACTCTTTATATCACCAAATGGCTACACTAAAAATCTTGGTGCAAGAAATTTTTCATTTTGGTTGGTTTTCAAGCTAGCCAAGTTTGGTGGTGAGACTTGGCTTGGTCGGTGCATGGTGCCAAGATTTGGGAAATTTTCAAAGTGTTGGTTTTTGAGATTTGATGGCTTTGGAGCCTACGTGGCGAAACGAGAGATGAGCACGTGTCGTGTAGCATGGACGGAGCATCACACTCCTATTCTACTCTTAGTAGTTCCCCGCGCAGAGGGTGAGGCCTCCGGAAGCAAGCAGGTTCATAGACGTAGAAAACTTCAGAGTTTTCCCTCTGATTCTGGTTCTTGCAGTGATGGGGTTGCGGATGAAGATTCAGGTGCGTTTTCTAGTAAAGAAGAATCGGAGAAATTGACTATCGGATCATTTCAATTGGGGTTCGGGTCCTCGAAGCAACCGTTTGGAACTCCCATGAAGAAGCTATTAGCTGAAGAACTGTCCCGAGAAACTGAACCCAAAAGAAGAGCTCCCGGTGTCATAGGCAGATTAATGGGTCTTGATGGACTTCCGTTGCAATTGCCTGCTAATAAGCATCACAAGCATGTATCAGAAAATAATGTGAAAGGGACAACACCGGCAGCGAAAACTCGAAGCAGTGGTAAACTATACGGAAGTCGAACATCTGGAAGAAGTTCAAAGAATCAACAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCTCAAACATAGAGGGTTGTAGGTATTCATCCCAGGGGTCTGTAAAGTTGAAGATCACTGATGATGAAATGTCATTTGTTGAACAGAAATTCATGGATGCCAAACTCCGTGCAACTTATCAGGATTTATCGTCTTCCCAGGATTCCCATGATACACTCGAGATTCTAGACTCTAACAACGATCTTTTGCAAAAATATTTTAAGCGGCCAGATTCTTTGTTTAAAAGGCATCTAGATGATCAGCAAGGTTCCCCATCCGAATCACATTTTGATCACATCAAAGGTACCAAATCATCAGATATAGAAAACTATGAACATGGTGACTTAAGCCCGAAGCCGGGTAGGGAGATAAAAGGGTTGAATTACAATAGATCTCATCAGAAGCATCGTGATGGTTATTCTTCCCGTGTAATCAGAAAACAGGATACTCGTAGTTCGCCAAAATCATCAAAGCTTCAGTTTCGGGGAAGAGGTGAACCTGATGCAGTCCCAACAAGGATTGTTATCCTAAAACCTAATCTTGGAAAAGTGCAGAAAGCTACCAAAATTGATTCACCACCTTGTTCTTCACGTACTTCTCTGTTGGATTATGGAAAGTATCCTAAATTTTCAGATAGCAGATTTAGGGACGCTGAACTGAATCAAAGGATAAATTTGCCTGATAATGCCTGGCATTCAAGGCAAAATTCATTGGAATCAAGAGAAATTGCAAAGGAAATCACAAGCCAAATGAAAAATAATTTGAGTAATGGCTCCATGTTATTATCAACTTCTAGATTTAGAGGAAATACGTGGGACAATGGCTCATGTAGTTTTTCTGGGAATGAATCTCTTGAGGAATCAGAGGTGACACCTGTAACTCTGGGAAACCCATTTTACGTAAGTAATACTATCAGCCCATCATCATGTTTTAGTGAATCATTTGTGAGTAAAGAGGCAAAGAAGAGATTGTCAGAGAGGTGGAAAATGTCACTCAAGTCTCAGCAGGGTCATTCTGTATCCAGGAGTGGCACACTAGCTGAAATGCTTGCGACCCCTGATAAGGAAATGAAAACAGCTCATTTTGACAGCAGCCCTAGTGGGGGTTTACGTGATAAAGTTTCTAGCAGTGGTAAACCTGCTGGGTGGGTTGAACCATTGGGTATTAGCAGTAGGGATGGATGGAAGGATGGATGTGTTGGAAGTTTACCAAGGTCTAAGTCTCTTCCTGCTTCATCTACTACTTCCTTCGGAAGTCCTAGAACAATTTTGTGCCACGAAGCTCTTCACGATGATCGATTTATGGTGCCAAAGGTAGCCTCTAAACGGGAAAGGAAGAAAGTGGTGAAATGTCTTGAACAGAGACAGTGTATGAATACGAGAAACCTAAAAAGCAAGAAGTCTCGGTGTTCTCATCCATCAAATCTAGAAGGCAATGAGTCATCCCCAGACTTGAATACAATTCAAAATAAAGTGAGGCTTAATCTTGAAGAGGATTTGCCGAAGCAAGTAATGTTGGCCGCTGAATCATTAGCCGAGATCGATGGAGAAACTATTGCAGTTACTGAAGCTATTGTGAATGTGGCAGATGAAAATGCAGTTGTTTCATCTGAATCTTATATTAAGGATTTATCAGTTGGGTCTTCCGCTAAAAATTCTGTCCCCTTGCAAACACCTGTATCTGGACTTGAATCTTCATGCTGTAAAGATGCGGATCAACCCAGTCCAGTCTCAGTGCTAGAACCTTCTTTTACTGATGATCTGTCATCATGTTCCGAGTGTTTTGAAAGTCTCAGTGTTGACATACAAGGGCTTCGGATGCAACTTCAGTTGCTGAAGCTAGAATCTGAAGAATTTGAAGAAGGATCCGTGCTAATTCAAAGTGATGAAGATGGTGGGGAAGCATACACAGGAATTTCAGAAGACAATGGATTACTTAATGGAGATAGCTGGGAGTCTTCCTACGTGATTGATGTCTTGTCTGAATCTGGAATTGATAGAGCTTTACCTGATGCATTTTTGGAAGTTTGGCATTCTCTTGAATGCCCTGTTAGTCTTTCAGTGTTTGATGAGCTTGAAAAGAAGTACTCTGATTGGAGTACTTGCCCACGGTCCGAAAGGAGATTGCTTTTTGATCGTATAAATTGGGGAATTATCGACATATACGATCAATTCGTTAGTGCACAATCATGGGTAATCCCTTCGAGAGCCACAAATCTTTGTTCTAGTGCGAAATTGATTAAAAGTGGAGTCCAAGACTGTTTGTACAAGATGCTGTGGAGTCAGGGAAAAGTAAAGGATACGACACTGGGGAAGGTGTTGGTTAGTGAATTGCAGTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGCAAAGTTGAGAGCTTGCTACTTGATGATCTAGTGGCAGAGATAGCTGTTACATAG	3357	0.4182	MELIKRHLWCPYQLSQLKCLCGLEFPILLIGCHDLWANVQLVKFGVETWLGRCMVPRFGKFSKCWFLRFDGWNALFISPNGYTKNLGARNFSFWLVFKLAKFGGETWLGRCMVPRFGKFSKCWFLRFDGFGAYVAKREMSTCRVAWTEHHTPILLLVVPRAEGEASGSKQVHRRRKLQSFPSDSGSCSDGVADEDSGAFSSKEESEKLTIGSFQLGFGSSKQPFGTPMKKLLAEELSRETEPKRRAPGVIGRLMGLDGLPLQLPANKHHKHVSENNVKGTTPAAKTRSSGKLYGSRTSGRSSKNQQEFKDVFEVSEISNIEGCRYSSQGSVKLKITDDEMSFVEQKFMDAKLRATYQDLSSSQDSHDTLEILDSNNDLLQKYFKRPDSLFKRHLDDQQGSPSESHFDHIKGTKSSDIENYEHGDLSPKPGREIKGLNYNRSHQKHRDGYSSRVIRKQDTRSSPKSSKLQFRGRGEPDAVPTRIVILKPNLGKVQKATKIDSPPCSSRTSLLDYGKYPKFSDSRFRDAELNQRINLPDNAWHSRQNSLESREIAKEITSQMKNNLSNGSMLLSTSRFRGNTWDNGSCSFSGNESLEESEVTPVTLGNPFYVSNTISPSSCFSESFVSKEAKKRLSERWKMSLKSQQGHSVSRSGTLAEMLATPDKEMKTAHFDSSPSGGLRDKVSSSGKPAGWVEPLGISSRDGWKDGCVGSLPRSKSLPASSTTSFGSPRTILCHEALHDDRFMVPKVASKRERKKVVKCLEQRQCMNTRNLKSKKSRCSHPSNLEGNESSPDLNTIQNKVRLNLEEDLPKQVMLAAESLAEIDGETIAVTEAIVNVADENAVVSSESYIKDLSVGSSAKNSVPLQTPVSGLESSCCKDADQPSPVSVLEPSFTDDLSSCSECFESLSVDIQGLRMQLQLLKLESEEFEEGSVLIQSDEDGGEAYTGISEDNGLLNGDSWESSYVIDVLSESGIDRALPDAFLEVWHSLECPVSLSVFDELEKKYSDWSTCPRSERRLLFDRINWGIIDIYDQFVSAQSWVIPSRATNLCSSAKLIKSGVQDCLYKMLWSQGKVKDTTLGKVLVSELQWLNLRDDIDGIGSKVESLLLDDLVAEIAVT	1118

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	666	694	-	-
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	166	203	-	-
	Vimu6g02599	1118	Pfam	Protein of unknown function (DUF3741)	344	388	IPR022212	-
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	772	794	-	-
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	392	462	-	-
	Vimu6g02599	1118	PANTHER	AFADIN	167	1116	-	-
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	276	305	-	-
	Vimu6g02599	1118	MobiDBLite	consensus disorder prediction	269	305	-	-
	Vimu6g02599	1118	Pfam	Domain of unknown function (DUF4378)	962	1114	IPR025486	-
	Vimu6g02599	1118	Pfam	DUF761-associated sequence motif	240	260	IPR032795	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02599	Vimu-Chr6	22584301	22593128	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g02599	223	1117	TRM (TON1 Recruiting Motif) Superfamily	AT3G53540	35.263	1.49e-122	398

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02599	-		-	pvu:PHAVU_001G171300g	1590.47

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02599	6	22584301	22593128	Vimu3g01406	3	26696550	26701854	PCT

Showing 1 to 1 of 1 entries