Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02589 ATGGGGAGAGGAGGCCAAGATTATGGGAAGCCGGAGAACACGAGTTCCGGAGCTTCGGACCGTGAAATCTTCAAGGCATGGGCCAAGGACGTGCAAGAGTGCGAGGAACACTTTAAGGTGAATGTGAAAGTGGGGTTGAATCACGAGGAGGTCGAGAATCGGCAAAAGATCTATGGATTGAACGAGTTGGAGAAGCACGACGGCCCATCGATATGGAGTCTGATTCTCGAGCAGTTCAACGACACGCTGGTTCGGATTCTCCTCGCCGCCGCAATAATTTCCTTCGTGCTCGCTTGGTACGACGGAGACGAAGGCGGTGAGATGGAGATAACGGCGTTCGTTGAGCCTTTGGTGATATTCCTAATACTAATCGTCAACGCGATTGTTGGCGTGTGGCAGGAGAGCAATGCGGAAAAGGCGCTTGATGCGCTGAAAGAGATTCAGTCGGAGCACGCGATGGTTATTCGAGAGGGCACGAAAATCCCCAGTTTGCCTGCGAAGGATCTCGTCCCTGGCGACATCGTGGAGCTTAAGGTTGGCGATAAGGTGCCTGCAGATATGCGCGTTGTGGAATTGATCAGTTCCACTTTGCGGTTGGAGCAGGGCTCTCTGACTGGAGAAAGTGAAGCGGTGAATAAGATTAACAGGCGTGTGGAGGAGGATGCTGATATCCAGGGGAAGAGATGTATGGTTTTCGCGGGAACCACTGTTGTTAACGGGCATTGCTTTTGCTTGGTCACTCAGACGGGCATGGACACGGAAATTGGGAAGGTGCATACGCAGATACATGTGGCGTCGCAGAGTGAGGAAGATACCCCATTGAAGAAGAAGCTCAACGAGTTTGGAGAGAACCTAACCAAGATAATTGGACTTATATGTATTTTAGTTTGGCTCATCAATGTTAAGTACTTCCTTACATGGGAGTACGTGGATGGCTGGCCTAGGAATTTCAAGTTTTCATTTGAAAAGTGTACCTATTACTTTGAGATTGCTGTGGCGCTGGCTGTGGCTGCTATTCCAGAAGGTTTGCCGGCTGTCATCACTACTTGCCTGGCTCTTGGTACTCGCAAGATGGCCCAGAAGAACGCTCTGGTTCGGAAACTACCGAGCGTGGAGACTCTGGGTTGTACCACTGTGATTTGTTCAGATAAAACTGGCACACTGACTACCAATCAAATGGCTGTGTCGAAATTAATCGCAATTGGCCATAATGTGGACACACTTCGAGCCTTCAAGGTGGAAGGAACTACGTACAATCCAGCTGATGGTCAAATTGAGAACTGGCCGACTGAAGGATTGGATGCTAATCTTCAGATGATTGCGAAAATAGCTGCTATCTGTAATGATGCCGGAGTCGCACAATCAGAGCATAAGTTCGTCGCCCATGGAATGCCTACTGAAGCAGCTTTAAAGGTTTTGGTAGAGAAGATGGGCCATCCTGAAGGATCCAAGGATATTCAGTCGGCAAGCACAAGTACCTTGCTGCGTTGTTGTGAATGGTGGAATGAGCATGACCGACGGCTTGCCACTCTTGAGTTTGACCGTGACCGGAAGTCAATGGGCGTCATTGTGGACTCTGGTCTAGGAAAAAGGTCGCTTCTAGTTAAGGGTGCTGTGGAAAACGTGTTAGACAGAAGCACTAAAATTCAGTTGCGAGATGGTTCTATAGTGAACCTGGATGATAATGCTAGGAACCTTGTATTGCAAGCACTTCATGAAATGTCAACTAGCGCATTGCGCTGTTTGGGATTTGCTTACAAGGATGAGCTCCCGAAATTTGAAAACTACAGTGGTAGTGACGATCATCCAGCACACCAGCTTTTGCTTAATCCTTCCAATTATTCATTAATTGAAAGTGAACTTGTTTTTGTTGGCTTGGTTGGATTGAGGGACCCCCCTAGGGAGGAAGTATACCAAGCAATTGAAGACTGCAGAGAGGCTGGAATCCGTGTTATGGTTATAACTGGGGACAACAAGAATACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTACCTCTGATGAAGACATTACTTCTAAAAGTTTGACGGGTAAAGATTTTATGGAATTGCGTGATAAAAAGGCATATTTGAACCAGAGTGGGGGCCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGAAGGAGAGGTGGTGGCCATGACAGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGCGTTGCAATGGGCATTGCAGGGACTGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCGGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAACATGAAGGCTTTCATAAGGTATATGATCTCTTCCAATATTGGCGAGGTTGCTTCAATATTTTTAACAGCTGCTCTAGGTATTCCTGAAGGATTAATACCTGTCCAGCTTTTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTCTAGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCGTTAATTAATTTGTGGATTTTATTCCGCTATATGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACACGGTTCTTTCTTGGGTATTGACCTAGCTGGGGATGGACATACTCTTGTCACTTATACTCAACTTGCCAACTGGGATCAATGCTCCTCATGGAAGAACTTCACTGCTTCTCCATTCACTGCCGGTTCTAAAACAATCACGTTTGACAACCCCTGTGATTACTTTCACACTGGTAAAGTGAAGGCTATGACATTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCTGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTAGCAATGTCAGTATCATTTGGTCTACACTTTTTGATCTTGTACGTGCCATTCTTGGCACAAGTATTTGGTATCGTGCCCCTGAGCTTGAACGAGTGGCTTTTGGTTTTGGCTGTTGCACTTCCTGTCATTCTGATTGACGAGATACTGAAATTTGTGGGGAGATGTACAAGTCGTCGACCATCAACTTCAAGAAAATCAAAGCAAAAATCAGAGTAG 3183 0.4615 MGRGGQDYGKPENTSSGASDREIFKAWAKDVQECEEHFKVNVKVGLNHEEVENRQKIYGLNELEKHDGPSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAMVIREGTKIPSLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKINRRVEEDADIQGKRCMVFAGTTVVNGHCFCLVTQTGMDTEIGKVHTQIHVASQSEEDTPLKKKLNEFGENLTKIIGLICILVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLIAIGHNVDTLRAFKVEGTTYNPADGQIENWPTEGLDANLQMIAKIAAICNDAGVAQSEHKFVAHGMPTEAALKVLVEKMGHPEGSKDIQSASTSTLLRCCEWWNEHDRRLATLEFDRDRKSMGVIVDSGLGKRSLLVKGAVENVLDRSTKIQLRDGSIVNLDDNARNLVLQALHEMSTSALRCLGFAYKDELPKFENYSGSDDHPAHQLLLNPSNYSLIESELVFVGLVGLRDPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFTSDEDITSKSLTGKDFMELRDKKAYLNQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYMVIGIYVGLATVGVFIIWYTHGSFLGIDLAGDGHTLVTYTQLANWDQCSSWKNFTASPFTAGSKTITFDNPCDYFHTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSLNEWLLVLAVALPVILIDEILKFVGRCTSRRPSTSRKSKQKSE 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02589 1060 SFLD p-type atpase 362 783 IPR044492 -
Vimu6g02589 1060 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02589 1060 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02589 1060 NCBIfam HAD-IC family P-type ATPase 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g02589 1060 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Vimu6g02589 1060 Pfam E1-E2 ATPase 147 361 - -
Vimu6g02589 1060 FunFam Calcium-transporting P-type ATPase, putative 627 776 - -
Vimu6g02589 1060 SUPERFAMILY HAD-like 379 835 IPR036412 -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Vimu6g02589 1060 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Vimu6g02589 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Vimu6g02589 1060 Gene3D - 378 776 IPR023214 -
Vimu6g02589 1060 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1048 - -
Vimu6g02589 1060 Gene3D - 45 265 - -
Vimu6g02589 1060 FunFam Calcium-transporting ATPase, putative 127 263 - -
Vimu6g02589 1060 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 795 1048 - -
Vimu6g02589 1060 SFLD C1.7: P-type atpase like 362 783 - -
Vimu6g02589 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1044 IPR023298 -
Vimu6g02589 1060 Gene3D - 391 632 IPR023299 GO:0000166
Vimu6g02589 1060 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 252 409 - -
Vimu6g02589 1060 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Vimu6g02589 1060 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
Vimu6g02589 1060 SUPERFAMILY Calcium ATPase, transduction domain A 150 260 IPR008250 -
Vimu6g02589 1060 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Vimu6g02589 1060 Pfam Cation transporting ATPase, C-terminus 816 1041 IPR006068 -
Vimu6g02589 1060 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Vimu6g02589 1060 Gene3D - 77 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02589 Vimu-Chr6 22474761 22480485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02589 1 1060 Primary Pumps ATPases(2) AT1G07670 79.586 0.0 1731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02589 K01537 - gmx:100788807 1978.37