Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02588 ATGTCTCGTCGAACGCCGCTGCCGCCGCCACCACCACAACCCAACACTATTCTTGACGACAGGTTTCCTTTCTTCAACCAATCCATGGACCTGGTCCAACTCCCAAACCCGCCAACAACACGAACCCGATCCCGCACCCTCGCCGATCTCCTAAACCGCGTCCAAGACGCTCAAAACGACACTCCACCTGCACCACCCCACCATGTTCTTGACCTCTCCTCCTCCTCCTCCACCCACCCCTTTGTCCTCTCTTTTTTCAATTTAACCTATAGTGTCAAGCTTCGCCGCAAGTTCACTTTTTTTCCCACCACCACCTTTTTCCCACCCGACCACGAAACTAAACCCAACGGCACCAAGACTCTCCTCAACGACATCTCCGGCGAGGCCAGGGACGGCGAGATCATGGCCGTCCTCGGTGCCAGCGGCTCTGGCAAGTCCACTCTCATCGACGCCCTCGCCAACCGCATATCAAAGGAAAGTCTCAAAGGTACAGTCACCCTAAACGGCGAGGTTTTAGACTCAAGTCTTTTAAAGGTGATTTCCGCTTATGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTCGAAGAGACGCTCATGTTCGCAGCGGAGTTCAGACTCCCTCGCTCCCTCTCGAAATCCAAGAAGAAAGCACGCGTCCAGGCCTTGATAGACCAGCTCGGCCTCCGCTCCGCCGCCTCCACCGTCATCGGCGACGAGGGCCACCGCGGCGTGTCCGGGGGAGAACGCCGCCGCGTCTCCATCGGAATCGACATCATCCACGATCCCATCGTGCTCTTCCTCGACGAACCAACTTCGGGCCTCGACTCCACAAGTGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATCGCTCAGAGTGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTAGGCATATTGGACCACTTGATCTTCCTCTCTCACGGTAACACCGTCTACAGCGGCTCTCCGGCGAACCTCCCAGCCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAAAACCGCACAGAATTCGCGCTGGACCTAATTCGAGAACTGGAAGAACAACCCAGTGGGACAAAGAGTTTAGTGGACTTCAACAAATCGTGGCAGCTGAAAGAAAAAAACTCGGTCCAGTCCCAGAATGATCACAAGCCCAAACCATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCAGAGGGAAACTGGTGTCCGGCGCTAACGGTAACGGCAAGAACTCAACGGCGGCAGTTTCCGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAAATGGCGGTGATAGGAAAAAGGTCTCTGACGAACTCACGAAGGATGCCAGAGTTATTCGGGATTCGTTTAGGTGCAGTTCTTGTGACGGGGGTAATCTTGGCAACAATCTTCTGGCACCTGGATGATTCACCAAAAGGGGTTCAGGAGCGCGTGGGGTTCTTCGCCTTCGCCATGTCCACCACGTTTTACACCTGCGCCGAAGCCATCCCAGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAGACAGCGTACAACGCCTACCGTCGCTCTTCCTATGTCCTCTCACATGCAATCATCTCACTCCCTTCCCTGCTCTTTCTCTCTTTCGCCTTTGCAGCCACCACCTTTTGGGCCGTGGGCCTGGCGGGCGGCTCTTCGGGCTTTCTCTTTTACTTTCTGGTGATCGTGGCCTCCTTCTGGGCTGGAAGCTCCTTCGTGACGTTCCTGTCGGGAGTGGTATCGCATGTGATGATAGGGTTCACGGTTGTGGTTGCGATCTTGGCCTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGAATGCCTCCGTACTGGATATGGTTCCACTACATGTCACTGGTGAAGTACCCGTACGAGGGAGTATTGCAGAACGAGTTCGACGTTAACTCTCCGAGGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCCTTGGGGATGGTGCCGGAGACACTGAAGGTGGAGCTGCTTAAGAGCATGAGCAAGACGCTGGGCATGAACATCACGAGGTCCAGCTGTGTGATCACTGGAGCGGATGTGCTGAAGCAGCAGGGGATAACGCAGCTGAGCAAATGGAGCTGCTTGTGGATCACGTTTGCATGGGGATTCTTCTTTCGCTTCCTCTTTTATTTGACGCTTCTCTTTGGGAGCAGGAACAAGAGGAGGTAG 2235 0.5468 MSRRTPLPPPPPQPNTILDDRFPFFNQSMDLVQLPNPPTTRTRSRTLADLLNRVQDAQNDTPPAPPHHVLDLSSSSSTHPFVLSFFNLTYSVKLRRKFTFFPTTTFFPPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTVTLNGEVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAASTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGILDHLIFLSHGNTVYSGSPANLPAFFSEFGHPIPENENRTEFALDLIRELEEQPSGTKSLVDFNKSWQLKEKNSVQSQNDHKPKPSLKDAISASISRGKLVSGANGNGKNSTAAVSVPAFANPFWMEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGVILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHAIISLPSLLFLSFAFAATTFWAVGLAGGSSGFLFYFLVIVASFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRMPPYWIWFHYMSLVKYPYEGVLQNEFDVNSPRCFVRGIQMFDNTPLGMVPETLKVELLKSMSKTLGMNITRSSCVITGADVLKQQGITQLSKWSCLWITFAWGFFFRFLFYLTLLFGSRNKRR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02588 744 SMART AAA_5 131 323 IPR003593 GO:0016887
Vimu6g02588 744 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524|GO:0016887
Vimu6g02588 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 338 IPR027417 -
Vimu6g02588 744 Pfam ABC-2 type transporter 441 647 IPR013525 GO:0016020|GO:0140359
Vimu6g02588 744 Pfam ABC-2 type transporter 303 395 IPR043926 GO:0140359
Vimu6g02588 744 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 69 732 - -
Vimu6g02588 744 FunFam ABC transporter G family member 6 111 337 - -
Vimu6g02588 744 Gene3D - 111 337 IPR027417 -
Vimu6g02588 744 Pfam ABC transporter 122 274 IPR003439 GO:0005524
Vimu6g02588 744 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 83 346 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02588 Vimu-Chr6 22467658 22470199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02588 121 372 Calmodulin-binding Proteins AT2G36910 25.385 8.48e-11 63.9