Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02579 ATGGTTAGATTCTGCTGGAAGCCAGCTTCTGTGGGTGATGATGGAGATGTAAATGGGAGAGTTGAGGGACTGCTATGGTACAAGGATTTGGGAAACCATCTTTATGGGGAATTCTCAATGGCTGTGATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGACTATCTGGGTCCTCAAGGAACCTTTATCGGTGTATACGATGGCCATGGTGGTTCTGCAGCCTCACAGTTTGTCAGTGACAATCTCTTCGCCAATGTCAAGACAGGTTTCGCAGCTGAGCATCAAGGCATATCAGAGAATGTTATAGGAAGGGCCTTTTCTGCAACAGAAGAGGGTTTTCTCTCTGTTGTGAAGAAACAGTGGTTAAGCAAACCACAGATTGCATCTACCGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTGTATGTTGCAAATGCAGGAGACTCAAGGGTGGTGCTGGGGAGAGTAGAGAGAGCAACAAGGGAAACAACAGCTATCCAATTGTCTGCAGAGCACAACGTTAACATCCAAATGGAGAGAGATGAAGTTCGGACAAGGCACTCCTATGATCCACAAATCGTGGTTAAGAAACACAATGTTTGGCGTGTGAAAGGCCTTATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAACAAGAATTTAACAGGGAGCCTCTGCCGAATAAGTTTAGACTACCCGAACCCTTCTTTAAGCCAATTCTTAGCTATGAACCAGAAATATCAGTGCATAAACTTGGTCCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTGTGGGAGCAACTTAGCAACCAAGAAGTTGTGAATATAGTCAGCAACAGTCCACGCAATGGTATTGGTAGGAGACTTGTGAAAGCTGCACTTCGAGAAGCAGCAAGGAAGAGAGAAATGAGAGTGTCAGACCTGCAAAAGATAGAAGAAGGAGTGAGGAGACACTTCCACGATGATATTACAGTTATTGTTGTATATCTAAATCCCAAACTCATAGATAATAGCTCTCTATTGGCTTCTCCTCTTTCAATCAGAGGAGCAAAAGCAATAGAGGCGGGGAAAGAAAAAAGAGTAAACAGAGCGCAGCGAGGGCGGCGAGTGCCGGTAAGTGCGAAGGCGGCGGCCGCCGGTGAGTGCGACGGTGGTGTCAACAATGGTCGTCGTGAAGCTCGTGCCTCAACCCTACCAGAAAGATCGACGCGGCGCATGGTCCTCGGATCCAGCGAGCACCCTCGCATAATTGCTCCTGTCTTCCAGCCTCCGCGTCAGCTCGCTTGGTGGTGTAAACTCGCAGGACCGTACGAGTTTGCGAGTTTACTCGCGATTTTAACAACACTGGGCCCAGAGAAATCGAGTATCCACCTAGAACCAAGCACGTATGCGAATCTAATACTGGCCTGTACCAACTTTAGATCTCTAAATTACGGCAAGAAAATCCATGATCACATTTCAAAATCCAAGTGTCAGCCTGACCTTGTTCTCCAAAATCATATTCTTAATATGTATGCAAAATGTGGTTCTCTGAAGGATGCTAGAAAAGTTTTTGATGCTATGAAGATGCGTAATGTGGTCTCTTGGACTATAATGATCTCCGGATACATGCAGAATGATGAAGAGAATGATGCCATCATCATGTATATTCAAATGCTGCGATCAGGTTATCTCCCAGACCAATATACATTTGGAAGCATCATTAAGGCTTGCTGCATTGGGGCAGATATAGACTTCGGCAGACAACTACATGGTCATGTCATTAAATCAGGGTATGATCGTCACTTAATTGCACAAAACGCTCTTATCTCAATGTATACGAAGTTTGGACAAATTGCACATGCCTCAGGTGTGTTTGCTATGATTTCCTCGAAGGATTTAATTTCCTGGGCTTCTATGATTACAGGGTTTACTCAACTTCGTAATGACATAGAAGCTTTATATGTTTTCAGAGATATGCTCAGGCAATCTGTTTATCAACCAAATGAGTTTATATTTGGCAGTGTATTCAGTGCTTGCGGAAGCCTTCTCGAACCAGAATTTGGAAGGCAGATTCATGGAGTCTGCGCTAAATTTGGTTTAGGGAGGAACATTTTTGCCGGGTGCTCCCTCTGTGATATGTATGCAAAATTTGGATTCTTACCTTTGGCAGAAAGGGCATTTTATCAAATTGAAAGCCCGGATTTAGTGTCATGGAATGCAATTATTGCAGCATTTTCTGACAGTGGTCATGTTAATGAAGCGATATCATTTTTTCGCCAGATGATGCATACAGGATTGATGCCAGATGACATTACTTTTCTCTCCTTACTCTGTCCTTGTGGGAGCTTTTTGACACGTAACCAAGGCATGCAAATGCATTCTTACATTATTAAAGTAGGTTTAGATAAGGAAGCAGCTGTATGCAACTCTTTGTTGACGATGTACACAAAGTGTTCAAGTCTAAATGATGCATTCAATGTTTTCTCATATTTGGGTAAAAGAGCCACTTTAGTTTCCTGGAATGCAATTCTATCAGCATGCTTGCAGCACAAACATGCAGGAGAGGCTTTTAGATTATTTAAGCTAATGCTCTTTTCTGACAATAAGCCTGACAATATCACCATAACTACCATATTAGGTACTTGTGCAGAATTGGCATCCCTAGAAGTTGGGAATCAAATCCATTGCTTTACTGTTAAAAGTGGGCTAGTCGTTGATGTTTCCGTCCGCAATAGGCTGATTGACATGTATGCAAAGTGTGGATCACTTAAACATGCTCGTGATGTTTTTGACTCAACCCAGAACCCGGATATTGTCTCGTGGAGTAGTTTAATTGTTGGCTATGCTCAGTTTGGACTTGGCCATGAAGCTCTTAATCTCTTTAGAATGATGAGGAATCTTGGTGTCCAGCCTAATGAGGTCACATATCTGGGGGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGTTGGCACTTGTATAAAACCATGGAACTGGAACTAGGTATTGCACCAACAAGAGAGCATGTTTCTTGCATGGTTGATTTACTTGCTCGTGCTGGATGCTTGTATGAAGCAGAGAATTTTATTAAGAAAACAGGATTTGATCCTGACATTACTACATGGAAAACTCTACTCGCTTCCTGTAAAACTCATGGTAATGTTGACATAGGAAAACAAGCTGCAGAAAATATATTAAAACTCGATCCTTGCAATTCAGCTGCTCTAGTGCTACTTTCTAATATAAATGCTTCTGGCGGCAACTGGAAAGAAGTTGCGAGACTAAGGCATTTAATGAAACAAATTGGTGTACAGAAGGTTCCTGGTCAAAGTTGGATAGAATTTAAGGATCAGATCCACGTGTTCTTCTCAGAAGACAGTTCTCATCCACAGAGCGGCAAAATCTACACTATGCTAGAAGATTTATGGTTGCAGATGCTGGATCATGGTTATGATCCTTGCCAAAGGTTAGACATTAGCTTTTGA 3522 0.4256 MVRFCWKPASVGDDGDVNGRVEGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGSAASQFVSDNLFANVKTGFAAEHQGISENVIGRAFSATEEGFLSVVKKQWLSKPQIASTGTCCLAGIICNGMLYVANAGDSRVVLGRVERATRETTAIQLSAEHNVNIQMERDEVRTRHSYDPQIVVKKHNVWRVKGLIQVSRSIGDAYLKKQEFNREPLPNKFRLPEPFFKPILSYEPEISVHKLGPEDQFLIFASDGLWEQLSNQEVVNIVSNSPRNGIGRRLVKAALREAARKREMRVSDLQKIEEGVRRHFHDDITVIVVYLNPKLIDNSSLLASPLSIRGAKAIEAGKEKRVNRAQRGRRVPVSAKAAAAGECDGGVNNGRREARASTLPERSTRRMVLGSSEHPRIIAPVFQPPRQLAWWCKLAGPYEFASLLAILTTLGPEKSSIHLEPSTYANLILACTNFRSLNYGKKIHDHISKSKCQPDLVLQNHILNMYAKCGSLKDARKVFDAMKMRNVVSWTIMISGYMQNDEENDAIIMYIQMLRSGYLPDQYTFGSIIKACCIGADIDFGRQLHGHVIKSGYDRHLIAQNALISMYTKFGQIAHASGVFAMISSKDLISWASMITGFTQLRNDIEALYVFRDMLRQSVYQPNEFIFGSVFSACGSLLEPEFGRQIHGVCAKFGLGRNIFAGCSLCDMYAKFGFLPLAERAFYQIESPDLVSWNAIIAAFSDSGHVNEAISFFRQMMHTGLMPDDITFLSLLCPCGSFLTRNQGMQMHSYIIKVGLDKEAAVCNSLLTMYTKCSSLNDAFNVFSYLGKRATLVSWNAILSACLQHKHAGEAFRLFKLMLFSDNKPDNITITTILGTCAELASLEVGNQIHCFTVKSGLVVDVSVRNRLIDMYAKCGSLKHARDVFDSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYKTMELELGIAPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITTWKTLLASCKTHGNVDIGKQAAENILKLDPCNSAALVLLSNINASGGNWKEVARLRHLMKQIGVQKVPGQSWIEFKDQIHVFFSEDSSHPQSGKIYTMLEDLWLQMLDHGYDPCQRLDISF 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02579 1173 NCBIfam pentatricopeptide repeat 848 881 IPR002885 -
Vimu6g02579 1173 NCBIfam pentatricopeptide repeat 949 983 IPR002885 -
Vimu6g02579 1173 NCBIfam pentatricopeptide repeat 644 678 IPR002885 -
Vimu6g02579 1173 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Vimu6g02579 1173 NCBIfam pentatricopeptide repeat 746 779 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat family 946 994 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat family 847 893 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat family 540 588 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat family 743 787 IPR002885 -
Vimu6g02579 1173 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 540 IPR002885 -
Vimu6g02579 1173 FunFam Phosphatase 2C family protein 26 356 - -
Vimu6g02579 1173 Gene3D Tetratricopeptide repeat domain 794 907 IPR011990 GO:0005515
Vimu6g02579 1173 Gene3D Tetratricopeptide repeat domain 454 592 IPR011990 GO:0005515
Vimu6g02579 1173 SUPERFAMILY PP2C-like 46 347 IPR036457 -
Vimu6g02579 1173 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 846 880 IPR002885 -
Vimu6g02579 1173 Pfam E motif 1064 1126 IPR046848 -
Vimu6g02579 1173 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Vimu6g02579 1173 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat 921 941 IPR002885 -
Vimu6g02579 1173 Pfam PPR repeat 644 672 IPR002885 -
Vimu6g02579 1173 Pfam Protein phosphatase 2C 69 301 IPR001932 -
Vimu6g02579 1173 ProSiteProfiles PPM-type phosphatase domain profile. 34 346 IPR001932 -
Vimu6g02579 1173 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vimu6g02579 1173 Gene3D - 28 355 IPR036457 -
Vimu6g02579 1173 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 595 1168 IPR046960 GO:0003723|GO:0009451
Vimu6g02579 1173 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 947 981 IPR002885 -
Vimu6g02579 1173 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 798 906 - -
Vimu6g02579 1173 Gene3D Tetratricopeptide repeat domain 696 793 IPR011990 GO:0005515
Vimu6g02579 1173 Gene3D Tetratricopeptide repeat domain 593 695 IPR011990 GO:0005515
Vimu6g02579 1173 FunFam Putative pentatricopeptide repeat-containing protein mitochondrial 467 592 - -
Vimu6g02579 1173 CDD PP2Cc 35 346 IPR001932 -
Vimu6g02579 1173 Gene3D Tetratricopeptide repeat domain 921 1161 IPR011990 GO:0005515
Vimu6g02579 1173 FunFam Pentatricopeptide repeat-containing protein At3g13880 699 797 - -
Vimu6g02579 1173 SMART PP2C_4 31 344 IPR001932 -
Vimu6g02579 1173 FunFam pentatricopeptide repeat-containing protein At2g33680 920 1146 - -
Vimu6g02579 1173 FunFam Pentatricopeptide repeat-containing protein At4g14850 596 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02579 Vimu-Chr6 22411850 22417152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02579 1 366 PP2C-type Phosphatase Gene Family AT3G12620 65.041 9.57e-166 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02579 - - gmx:100810873 1249.19