Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02575 ATGAAGTACCAAGGAAAAAGAAATGTTAGAGAATTCATCATGGAAATGTTGAACATTGCTTCAAAACATAAGGCGCTGAAACTTAAGTTGGCTGCCCGAGAGAACCGTGTGGTGGTCTGTGATTTGCGGTTTCTTTTTCTTTCTGATCACGGTGCTGCCTTCATTGAAGGGAAAACAAACATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAACAAGATTGATAAGATGGAAGTTCAGGACAGTCTGGTTGGTCAGATCAAAGCCACCCCAGGAAAGTTGAAGAGAAATACATCCACAAATTCAAAAGATACATCTAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTCCGCGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAGTGTCTTCTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGAGAGAGTAGCTGAGAATTGGAGTGATTCTTCCCTATGTCAATGTTCTTCATCTGCCCCAGATATATCTTCTGACAGCCAGAACAATAGATTAAGTTTTGCTGACATGAAACTCTGCATACATTTTGTTGTTGCCATTAAGCAACTTGACCGGAATGGGCTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTACTTCATCATCCAAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCGTTAGGATCCTTGGAAGACCACTTGCATGACATTCCTCTTGGCAAGAAACGACTAGATTGGAACACCCGAATGAGAATAGCTGCTGGTGCAGCCAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATTTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCAGCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTTGGCCCAGTTGGGGAGAACACACATGTATCAACAAGAGTTATGGGAACTTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTCGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCGGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATAGAAGAAAGTTTTCTCAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCGAGAGGACTATACCAGGCCCTTGCTGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTAACAGCTTTGTCTTACCTTGCTTCACAAAAATATGATCCCAATACACACACAGTCCAAAACTCACGCCTTGCTCCGGCTCATGCTTGGTGGATACAACAAAATCTGGAGAAAAATTCAAGTATATTGTTCAATGGGTTTCTCAACTATAAGTCCTGTACTCAAAACCGCTTCCATTTATTATGTCTGGAGCTAAGATAG 1515 0.4205 MKYQGKRNVREFIMEMLNIASKHKALKLKLAARENRVVVCDLRFLFLSDHGAAFIEGKTNMGWIPCSGYSGTKNKIDKMEVQDSLVGQIKATPGKLKRNTSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQERVAENWSDSSLCQCSSSAPDISSDSQNNRLSFADMKLCIHFVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPLGKKRLDWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYQPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAEQANMRPVIADVVTALSYLASQKYDPNTHTVQNSRLAPAHAWWIQQNLEKNSSILFNGFLNYKSCTQNRFHLLCLELR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02575 504 Gene3D Phosphorylase Kinase; domain 1 193 252 - -
Vimu6g02575 504 SMART serkin_6 133 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02575 504 Pfam Protein tyrosine and serine/threonine kinase 200 383 IPR001245 GO:0004672|GO:0006468
Vimu6g02575 504 Gene3D Phosphorylase Kinase; domain 1 103 175 - -
Vimu6g02575 504 PANTHER OS07G0668900 PROTEIN 95 158 - -
Vimu6g02575 504 MobiDBLite consensus disorder prediction 94 114 - -
Vimu6g02575 504 SUPERFAMILY Protein kinase-like (PK-like) 119 462 IPR011009 -
Vimu6g02575 504 MobiDBLite consensus disorder prediction 92 114 - -
Vimu6g02575 504 Gene3D Transferase(Phosphotransferase) domain 1 253 464 - -
Vimu6g02575 504 ProSiteProfiles Protein kinase domain profile. 133 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02575 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Vimu6g02575 504 FunFam Serine/threonine-protein kinase PBS1 252 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02575 Vimu-Chr6 22377158 22383523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02575 93 447 Glycoside Hydrolase AT3G07070 58.564 7.44e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu6g02575 PK_Tyr_Ser-Thr 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02575 - - gmx:100818024 679.863