Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02574 GTTGATGGTTTTGTTTTTCTTGCAAACAGAAACACTCGTAAAGTGAACACACTTTGCGAAAGACGGACATATTTGAAGATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGACCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTTTTAGCTGGTGCAATCAATGTTTCTCCTGATATTGCATCTTCTCAAGCTACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTGCAGCATTGAATCACCCCCATGCAGGGTTTGATTCTTGTCAGGCTGATACTTTTGGAGCTGCACTCAGTAACTCTTCTGACAAGATTCCAAAACTTGACAACAATCAGTCCCTCATATACAAACCAACGGCAAAACTTGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGCACTGGTCAGCAGCAAACACGGCAGTTAATGGAGGCCAATTTTCAACATTCCATCAATGAAAAGTTTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGCCCGGCATACAGAAATAAACGAGATCAGTGAAGCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGAGCAGAAGACTTTAACATCCTCTGCGAATTGTGATCGACCTTCTTATGATGGGTACAACTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGTGAGTACCCCAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACATAACCATTTGAAGCCACAGCTTCCTAAAAGAAACACAGCAACAGGGACACAAGGTTCGGGGGTGTTGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGCGAGAGGAATGAAGGCAATGAAAGTAGAGTTGAGAACACAGGAGGAGGACTATCTGTGCTTTCAGATTATTATGTCAAACTTCCACAGCCTAATGATTCTGGTCTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTTTGAGGCACAGGAAGATGAACCCAGAAGCAAAAGAAGGAAAAATGAGAATCTATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACTGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATACGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGCTACTACAGATGTACTAATGTAAAGTGCAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACCACATATGAAGGAAAACACAATCATGATATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAGAGAGACTCACAGGCTTCTCTTTGTAAAGATAAAGCATGA 1500 0.4227 VDGFVFLANRNTRKVNTLCERRTYLKMDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDIASSQATVSAIRPKTVRFKPAALNHPHAGFDSCQADTFGAALSNSSDKIPKLDNNQSLIYKPTAKLVSKTTVSLLANMGNCSTGQQQTRQLMEANFQHSINEKFRTNMSSHLDQSIARHTEINEISEASKMVQQNTEEEQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHLKPQLPKRNTATGTQGSGVLSDGMVQDMWSNSHSERNEGNESRVENTGGGLSVLSDYYVKLPQPNDSGLNIGATNAGGGSTENSCGLSGECEEGSKGFEAQEDEPRSKRRKNENLSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHDMPLKNTGNVASERDSQASLCKDKA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02574 499 MobiDBLite consensus disorder prediction 275 299 - -
Vimu6g02574 499 MobiDBLite consensus disorder prediction 349 391 - -
Vimu6g02574 499 SUPERFAMILY WRKY DNA-binding domain 218 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 Pfam WRKY DNA -binding domain 419 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 Pfam WRKY DNA -binding domain 221 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 MobiDBLite consensus disorder prediction 468 499 - -
Vimu6g02574 499 FunFam WRKY transcription factor 204 279 - -
Vimu6g02574 499 ProSiteProfiles WRKY domain profile. 221 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 SUPERFAMILY WRKY DNA-binding domain 410 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 MobiDBLite consensus disorder prediction 349 363 - -
Vimu6g02574 499 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 483 IPR044810 GO:0003700
Vimu6g02574 499 FunFam WRKY transcription factor 57 403 477 - -
Vimu6g02574 499 MobiDBLite consensus disorder prediction 280 299 - -
Vimu6g02574 499 ProSiteProfiles WRKY domain profile. 412 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 SMART WRKY_cls 417 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 SMART WRKY_cls 219 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 MobiDBLite consensus disorder prediction 370 391 - -
Vimu6g02574 499 Gene3D WRKY domain 403 478 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g02574 499 Gene3D WRKY domain 204 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02574 Vimu-Chr6 22372600 22374936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02574 119 478 WRKY Transcription Factor Family AT2G37260 44.974 3.77e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g02574 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02574 - - vra:106757963 957.592