Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02568 ATGGCAATGGTGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATCGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACAGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCACAAAAGGCATCCAAAAATGTTCTGGTGCCATTTCCAGCTTCCCTGGCATATGTTTCTCCCACGTGGGATGAAAATTTCTTGCTCATGAATTCTGGATCCAACAGATCACTGTCCTATCTGGATGAACTCACCAATCTTCATGGAGATGAAGGCATGCGTGTTTCTTTTTATTCTTTCATATTTTTGGTTCAATTGTTCTCTGACATTGGATCAAAGGGGATGACAATAATTGGCAACAGCTGCGTTAGTGATGTTGGGAACTCTACTAGAACGTTGTCTGCTACTGAGATACCAAAACAAGGGAAACAGACTCGGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTAAAGGAAATGGATCCTATAAACTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAATGCCATGTCATCATACGATGCCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAGACGTTAA 891 0.422 MAMVPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPFPASLAYVSPTWDENFLLMNSGSNRSLSYLDELTNLHGDEGMRVSFYSFIFLVQLFSDIGSKGMTIIGNSCVSDVGNSTRTLSATEIPKQGKQTRVLHGLPDFAEVYSFIGSIFDPDTKGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRNAMSSYDANTELRQELMSRNRQRIYNVKQLNRR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02568 296 SMART sant 25 73 IPR001005 -
Vimu6g02568 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Vimu6g02568 296 FunFam protein REVEILLE 6 isoform X1 28 76 - -
Vimu6g02568 296 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Vimu6g02568 296 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Vimu6g02568 296 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Vimu6g02568 296 MobiDBLite consensus disorder prediction 1 27 - -
Vimu6g02568 296 CDD SANT 28 71 IPR001005 -
Vimu6g02568 296 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vimu6g02568 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Vimu6g02568 296 PANTHER SWI/SNF COMPLEX-RELATED 12 280 - -
Vimu6g02568 296 Gene3D - 29 76 - -
Vimu6g02568 296 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02568 Vimu-Chr6 22335536 22338135 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g02568 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02568 - - gmx:100783482 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02568 6 22335536 22338135 Vimu3g01152 3 19034633 19039710 PCT