Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02567 ATGGCGGCAGCAGCAGCAAGGCCTCTCGTCTCCGTTCAAACCCTAGAAGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGACCCGACATTGTCAATTTCGTCCACTCCAATATTTCTCGCAACAGCCGCCAACCTTATGCCGTCAGCAAGCGCGCCGGCCACCAGACCTCCGCCGAGTCATGGGGCACGGGCCGTGCCGTGTCGCGTATCCCTCGCGTCCCCGGCGGCGGCACGCACCGTGCTGGCCAGGCCGCCTTCGGTAACATGTGCCGCGGCGGTCGCATGTTCGCGCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAATGTTCAGCAGAAACGCCACGCCGTGGTCTCTGCCATCGCTGCCTCCGCGATCCCCGCCCTTGTCCAGGCCCGCGGCCACCGCATCGAGTCTGTCCCTGAGCTTCCCCTCGTCGTCAGCGACAGCATCGAGAGCGTGGAGAAGTCCAAAGAAGCGGTGAAAATTCTTCAGAAGATCGGTGCGTTCCCCGACGCGGAGAAGGCGAAACTGAGTCACGGAATTCGTCCCGGTAAGGGAAAGATGAGGAACCGTAGGTACATTTCACGCAAGGGTCCTCTCATCGTTTATGGATCCGAAGGTGCTAAAGTTGTCAAAGCGTTCAGGAACATTCCTGGTGTTGAGTTGGCAAATGTGGACAGGCTTAACCTTCTGAAGCTTGCACCCGGTGGCCACCTTGGGAGGTTTATTATTTGGACCAAGTCTGCGTTTGAGAAATTGGACTCCATTTATGGGTCTTTCGACAAGGTCTCCGAGAAGAAAAAGGGCTACCTGCTTCCCCGCCCCAAGATGGTTAACTCGGACTTGTCCCGTATCATTAATTCCGATGAAGTTCAGTCCGTGGTGAGGCCCATCAATAAGGAGGTTAAGCGCGCCACTCTGAAGAAGAACCCTCTGAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAAAGGATGGCTCTTCTCGCTGAGAAGCAGCGTCTTGTTGCTAAGAAGGAAAAGCTTGATCAGAAACGCAACATTGTTTCCAAGGAGGAGGCTTCTGCTATCAGAGCTGCTGGGAAAGCGTGGTATCAAACAATGGTGTCAGACTCTGATTATACAGAATTTGACAACTTTTCTAAGTGGTTGGGTGTCTCCCAATAA 1209 0.5484 MAAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPALVQARGHRIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIVYGSEGAKVVKAFRNIPGVELANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKVSEKKKGYLLPRPKMVNSDLSRIINSDEVQSVVRPINKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDQKRNIVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02567 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vimu6g02567 402 MobiDBLite consensus disorder prediction 52 70 - -
Vimu6g02567 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Vimu6g02567 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vimu6g02567 402 Coils Coil 339 366 - -
Vimu6g02567 402 PANTHER 60S RIBOSOMAL PROTEIN L4 5 395 IPR045240 -
Vimu6g02567 402 FunFam 60S ribosomal protein L4 4 305 - -
Vimu6g02567 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vimu6g02567 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Vimu6g02567 402 MobiDBLite consensus disorder prediction 52 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02567 Vimu-Chr6 22331892 22333413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02567 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.296 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02567 K02930 - gmx:100796712 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02567 6 22331892 22333413 Vimu6g02567 6 22331892 22333413 ECH
Vimu6g02567 6 22331892 22333413 Vimu3g01150 3 18971333 18973344 PCT