Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02566 ATGCTGGATCTTAACCTCAACGCCGATTCCCCCTCCGACAACAACCACACGCCTCCTCTCTCCGTCGCTCAAATGGAGAGCTCCGGAAGCTTCAATTCCTCTGTTGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAGCAACATCGCTTCTCCCTCCGCAGGAGAATCCTCTGTCCGCACCATCCAGCTCTTTCCGGCCACCGACTCAGGAGTCTCGCCGACTTGGCTGGACTTCTCGTCGAAGGTGGATCAACACGGTGCCGCCTCGGAGCAGAGGATCACTCCGCGGCAGCCGCTGGTGAAGAAGAGCCGCCGTGGACCGAGGTCGCGGAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGGACAGGAAGATGGGAATCTCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGCGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGACGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACGGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTTTGGGTAAAAAGTATATATATCTTGGTCTATTCGACAGCGAGTTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAACGAAGATGGCAAGCAAAATCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACACTGACTCTCAAATCAAGAACACACCTAGCAACGGAAGTGGTTTGAAAGGTCCACCCAGCTGGGATGATATCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTTCAGGCATCTCAAGGCATCTACAGAGTATCTGGGCATCATCCTTCCACCTGGAATGGTGGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCGTGCCTAATTGGGCATGGCAAGTCCAAGGTCCGTATGGCGGGCCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCATTTTCCAAACATGACTTTCCTCCACTCACATTTTCCACCATCGATCACCAACTCGGGCACCGTATCCCCTTTCTTCATCGGTAGCTGA 1383 0.5119 MLDLNLNADSPSDNNHTPPLSVAQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNSNIASPSAGESSVRTIQLFPATDSGVSPTWLDFSSKVDQHGAASEQRITPRQPLVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDGKQNLDLNLGIAPPSYTDSQIKNTPSNGSGLKGPPSWDDIPVEKRFMFEHSGSRSLNVQASQGIYRVSGHHPSTWNGGNFFPIYEETAIEKRMEAGPVPNWAWQVQGPYGGPTLTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNSGTVSPFFIGS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02566 460 Pfam AP2 domain 218 268 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 Pfam AP2 domain 127 175 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 CDD AP2 218 278 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 ProSiteProfiles AP2/ERF domain profile. 219 276 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 Gene3D AP2/ERF domain 126 185 IPR036955 GO:0003700|GO:0006355
Vimu6g02566 460 Gene3D AP2/ERF domain 218 277 IPR036955 GO:0003700|GO:0006355
Vimu6g02566 460 SUPERFAMILY DNA-binding domain 218 278 IPR016177 GO:0003677
Vimu6g02566 460 MobiDBLite consensus disorder prediction 1 26 - -
Vimu6g02566 460 MobiDBLite consensus disorder prediction 7 26 - -
Vimu6g02566 460 FunFam AP2-like ethylene-responsive transcription factor 218 278 - -
Vimu6g02566 460 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Vimu6g02566 460 PRINTS Ethylene responsive element binding protein signature 258 278 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 SMART rav1_2 219 282 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 MobiDBLite consensus disorder prediction 100 127 - -
Vimu6g02566 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 309 - -
Vimu6g02566 460 ProSiteProfiles AP2/ERF domain profile. 127 183 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Vimu6g02566 460 FunFam AP2-like ethylene-responsive transcription factor 126 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02566 Vimu-Chr6 22308067 22311638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02566 107 312 AP2-EREBP Transcription Factor Family AT4G36920 78.947 2.33e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu6g02566 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02566 K09284 - gmx:100808212 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02566 6 22308067 22311638 Vimu6g02566 6 22308067 22311638 ECH