Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02565 ATGGAGGCTACTTTACTCTTTCTCTCCTTTCTCACGTTTCTACTCTCATTCCCACTCTACTCACCTTTTTCTTCTGCTCAGATTATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGTACAACAGAATTCACTGATGAAATTGGTCTTCGGTGGACTCCTGATAATAAGCTTACTTATGGGCAAACAAGTATTATATCAGTTGCAAATGAGACACGGAAGCAATACACGACACTTAGACACTTTCCTGCTGATTCGAGGAAATACTGTTACACACTTGATGTTGTGAGTAGGACGAGGTATCTGCTCAGGGCCTCTTTCTTGTATGGGAACTTTGACAATAATAATGTTTATCCAAAATTTGACATTTCTGTTGGGGCTACACACTGGTCTACGATTGTTATATCGGATGCCAACAGTATAGAAATGCGAGAGCTAATATTTCTGGCTTCAAGTCCTACAGTGAGTGTTTGTTTATCAAATGCAACAACCGGACAACCATTCATCTCTACCCTTGAACTTCGCCAATTCAATGGTTCAGTTTATTATACACAATTTGAGGAACACTTTTACCTTAGTGTCTCTGCAAGGATAAATTTTGGTGCAGAGAATGATGCTCCAATTAGGTATCCTGATGATCCTTTTGATAGAATTTGGGAGTCGGATTCTGTAAAGAAAGCTAATTATCTTGTTGATGTAGCTGCTGGAACCGAAAAAATTTCTACAGAAGCACCAATTGATGTTAACAGAGATGAAATGCCACCAGTGAAAGTGATGCAGACAGCTGTAGTGGGTACTAATGGATCTCTAACTTACCGATTAAACTTGGATGGTTTTCCTGGTACTGGTTGGGCATTCACCTATTTTGCAGAGATTGAAGATCTGGGTCCCAATGAGTCCAGAAAATTCAGGCTAGTACTTCCAGGCCAGCCTGATGTTAGTAAGGCAGTTGTAAATATTGAAGAAAACGCTCAAGGGAAATATCGTCTTTATGAACCAGGATATACCAATATATCCCTACCTTTTGTGCTCTCTTTTAGATTTGGCAAGACATATGATTCCTCTAGGGGACCTCTTCTAAACGCCATGGAGATAAACATGTATTTGGAGAAAAATGATGGTTCTCTAGATGGAGCAACTATCTCCAGCATACTTTCGCACTACTCTGAAGCAGACTGGGCCAAAGAAGGTGGTGATCCATGTCTACCTGTTCCATGGTCATGGGTTCGATGTAACTCTGATCCACAACCAAGAATAGTGTCAATCTTGTTATCCAATAGAAACTTGACTGGCAATATTCCTTTGGATATCACCAAATTGGTTGGTTTGGTTGAACTATGGCTTGATGGAAATATGTTGACTGGTCCATTACCTGATTTTATTGGGTGCATGGACTTAAAGATCATTCATCTAGAAAACAATCAATTGACCGGTGTGCTCCCAACTTCTTTAGTGAACCTTCCAAACTTGAGGGAACTGTATGTGCAAAATAACTTGTTATCTGGAACAATACCATCAGATCTTCTTAGCAAGGATTTGGTTTTGAACTACTCTGGAAACCTCAATCTTCACAAAGAAAGCAAAATAAAGGGGCATATGTACGTAATTATTGGTTCATCAGTTGGGGCTTCTGTTCTACTTTTGGCTACTGTTATATCTTGCCTGTATATGCGAAAAGGCAAGAGAAAATATCATCAGCAAGACCGAGCTGATTCTCTCCCTGCTCAAAGGCTGGCTTCTTGGAAGAACGATGATCCTGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATAACTTCGAGAAAAAAATTGGTGCTGGTGGTTTTGGAGTTGTCTACTATGGGAAGCTAAAAGATGGAAACGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCGAATGAGCAATTCATTTTGTGCTCTTTTGGTTTTTTGCTTTGTCCATTAGCCAATGGAAGAAGCATCAATTGGATTAAGCGTCTTGAGATTGCTGAAGATGCTGCCAAAGGTATTGAATATCTTCATACGGGTTGTGTTCCTGTCGTTATTCATAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAAAGCCAAGGTTTCTGATTTCGGTCTTTCAAAACTTGCTGTTGATGGAGTCTCACATGTTTCAAGCATAGTTCGGGGAACAGTAGGATATCTTGATCCTGAGTACTATATTTCCCAACAGCTGACAGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTCCTTGAACTAATGTCTGGTCAAGAAGCAATATCAAATGAAAGCTTCGGTATAAATTGCCGAAACATAGTCCAATGGAATGATTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCTCATGGACATATGCGACCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCCATATCTATTGAAAGACAGGCAGAAGCATTAAGAGAAGGGAACTCAGATGATATGTCCAAAAATTCTTTTCAGTCTTCCTTGAACATGGGTTCTATGGATCTAGTTGGAGCTGAGAGTTACTTGTCAATTGATGAATCAGTTGCACAGCCAACAGCAAGATAG 2643 0.3965 MEATLLFLSFLTFLLSFPLYSPFSSAQIMQGFVSLDCGGTTEFTDEIGLRWTPDNKLTYGQTSIISVANETRKQYTTLRHFPADSRKYCYTLDVVSRTRYLLRASFLYGNFDNNNVYPKFDISVGATHWSTIVISDANSIEMRELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSVYYTQFEEHFYLSVSARINFGAENDAPIRYPDDPFDRIWESDSVKKANYLVDVAAGTEKISTEAPIDVNRDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGTGWAFTYFAEIEDLGPNESRKFRLVLPGQPDVSKAVVNIEENAQGKYRLYEPGYTNISLPFVLSFRFGKTYDSSRGPLLNAMEINMYLEKNDGSLDGATISSILSHYSEADWAKEGGDPCLPVPWSWVRCNSDPQPRIVSILLSNRNLTGNIPLDITKLVGLVELWLDGNMLTGPLPDFIGCMDLKIIHLENNQLTGVLPTSLVNLPNLRELYVQNNLLSGTIPSDLLSKDLVLNYSGNLNLHKESKIKGHMYVIIGSSVGASVLLLATVISCLYMRKGKRKYHQQDRADSLPAQRLASWKNDDPAEAAHCFSFSEIENATNNFEKKIGAGGFGVVYYGKLKDGNEIAVKVLTSNSYQGKREFSNEQFILCSFGFLLCPLANGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISNESFGINCRNIVQWNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAEALREGNSDDMSKNSFQSSLNMGSMDLVGAESYLSIDESVAQPTAR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02565 880 Gene3D Transferase(Phosphotransferase) domain 1 658 851 - -
Vimu6g02565 880 SMART serkin_6 602 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02565 880 SUPERFAMILY L domain-like 403 519 - -
Vimu6g02565 880 Pfam Protein kinase domain 673 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02565 880 ProSiteProfiles Protein kinase domain profile. 602 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02565 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Vimu6g02565 880 SUPERFAMILY Protein kinase-like (PK-like) 588 822 IPR011009 -
Vimu6g02565 880 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524
Vimu6g02565 880 Gene3D Ribonuclease Inhibitor 378 534 IPR032675 -
Vimu6g02565 880 Gene3D Phosphorylase Kinase; domain 1 578 653 - -
Vimu6g02565 880 PANTHER OS07G0107800 PROTEIN-RELATED 465 828 - -
Vimu6g02565 880 FunFam Leucine-rich repeat protein kinase family protein 377 529 - -
Vimu6g02565 880 Pfam Malectin-like domain 35 364 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02565 Vimu-Chr6 22273421 22279993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02565 24 681 Receptor kinase-like Gene Family AT2G37050 65.086 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu6g02565 Malectin_like 7.3e-77 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02565 - - gmx:100784017 1592.4