Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02564 ATGGCCGACGGTCCGTCCAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCTATCGCGAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATCGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCGGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGGGTGACACCAAGGGCTCAGCCAAGGGTGGAGACACCTCTGGTAAGAAAGATGTTCAACCGGGTCCTAGTGCTCAGCTTACTCATCAAGGTTCTTTTTCCCAAGGGGTTAGTTACACAAATTCTCAGAGATGTAATGAATTTGTGGCAAGCACCCTAATAGGATGTGTGACTTACTGCTATTTCCATTTGCAGAAATATGCCACACTGGTGGACAACCTTGCGGCTCACCCTAGTATGATTATGGATAATGTGGGCGATGGAGAGTATAACCTTATGGTTGAAGTGTCCCTTAGTGTAGTTAGGGATATTGGGTCAACATATGATGGTTCCAATGCAAGGCCCAGAATAGGTGTCAAGTCTATTAGCCCTCCTGTTCTAATATACTATCCACGCCGGTTAGCAAGTGCTCACGATATTGAATATCTTAATGTTATGTGA 783 0.4879 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSGKKDVQPGPSAQLTHQGSFSQGVSYTNSQRCNEFVASTLIGCVTYCYFHLQKYATLVDNLAAHPSMIMDNVGDGEYNLMVEVSLSVVRDIGSTYDGSNARPRIGVKSISPPVLIYYPRRLASAHDIEYLNVM 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02564 260 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu6g02564 260 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Vimu6g02564 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vimu6g02564 260 MobiDBLite consensus disorder prediction 117 145 - -
Vimu6g02564 260 Gene3D Histone, subunit A 16 149 IPR009072 GO:0046982
Vimu6g02564 260 MobiDBLite consensus disorder prediction 1 27 - -
Vimu6g02564 260 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vimu6g02564 260 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vimu6g02564 260 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vimu6g02564 260 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu6g02564 260 SUPERFAMILY Histone-fold 27 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02564 Vimu-Chr6 22266252 22271479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02564 17 163 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.124 1.36e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu6g02564 CBFD_NFYB_HMF 2.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02564 K08065 - gmx:100798667 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02564 6 22266252 22271479 Vimu6g02564 6 22266252 22271479 ECH
Vimu6g02564 6 22266252 22271479 Vimu3g01145 3 18632293 18633389 PCT