LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02560	ATGAACGTTCTCATTCTCACCAAAAGCTTTTGGGCAAAAAAGAAAACGAAGAACGCAATCGGAGACGGGATGCACGGAACACCAGAAGAAGAGACGGTGCAGAGGATCGGATGCGTATCCGTGGACCCATCCGGGTTAATGGAAGTACTCGACATTTACTTTCCCGAACAGCTCTTCACCGTCGAGAAAACCTGGAACAATCTCGCTTCCTCTCTTTTTTCCTTCTTTTCTTCAACGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTCTGGAAACAATATCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTATCATGATGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCACATGCATGAATGCTGCTGTACATAAGGTTCTGCTTTCCTATTCGGAGAATCACAATCTGGAGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGTATATTTCCTGATGGAAAGTACTCTCCACCATCAACTTGCAATTTGAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGGTCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAGTTATTAAAACATGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGCGAGCTTAGCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGTATGCCTAAGCCTGCATGTTTATATTATCCACCATTTATGATTCCCTGTTTTAAGACTTGCTTACATGTTGAAGACAAAGCAAATGACTCTAATGCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTGGAATTTGTTGCAAAGTTTAAAGGGGAACACGGTTCAGATTTATTTCGCCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCTGCTGCAGCAGTTTCTCCGCGTGGCATATATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTATTGAAGGATCCCATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGCTGGCGGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCTGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAGTGTGTATCTATCGCGAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCCGATGAACTTCTGGACAAGCGACTCTCGGACCACATTATGGCACTTCCATATCGGTGTCTCAGAAATCCTCCAATCCAATCGACTGTTGTGACTGCATTGTGGTTTCACCCAAAAACTGTTATTATGATGGGCGATGGTAGTTGTTGTGTTAGTGGGCAACACTCTGTGTCTTTTCCCCCAGTTTCAGTGTTCCACTCCCACTTATGTAGAAACTCAAACTTTTCCTTTACCTGTTACTTAAAAAACCGCTACTCACGCAAGGAAGGTCTCCTCTACTCCTCCATCAACATGAGTTCACCTCCTCTAGCATCTTGCTGA	1986	0.4255	MNVLILTKSFWAKKKTKNAIGDGMHGTPEEETVQRIGCVSVDPSGLMEVLDIYFPEQLFTVEKTWNNLASSLFSFFSSTVGQNLVSQVKSGSGNNILSLDFQQFQQIYHDEEFYKMLEEKPKIALTCMNAAVHKVLLSYSENHNLELGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQTISRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELSQDLVDACIPGDVVTVTGIIRGINNYMDIGGGMPKPACLYYPPFMIPCFKTCLHVEDKANDSNAKTRPAELFDLFSFSSKDLEFVAKFKGEHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVLKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSDHIMALPYRCLRNPPIQSTVVTALWFHPKTVIMMGDGSCCVSGQHSVSFPPVSVFHSHLCRNSNFSFTCYLKNRYSRKEGLLYSSINMSSPPLASC	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02560	661	Pfam	MCM P-loop domain	364	570	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	SUPERFAMILY	Nucleic acid-binding proteins	93	294	IPR012340	-
	Vimu6g02560	661	Gene3D	-	192	242	-	-
	Vimu6g02560	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	470	484	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	521	533	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	497	510	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	410	425	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	SMART	AAA_5	411	557	IPR003593	GO:0016887
	Vimu6g02560	661	Pfam	MCM OB domain	165	293	IPR033762	-
	Vimu6g02560	661	Coils	Coil	482	502	-	-
	Vimu6g02560	661	Gene3D	-	345	596	IPR027417	-
	Vimu6g02560	661	FunFam	DNA helicase MCM8 isoform X1	192	243	-	-
	Vimu6g02560	661	Gene3D	-	165	294	IPR012340	-
	Vimu6g02560	661	SMART	mcm	161	656	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	377	571	IPR027417	-
	Vimu6g02560	661	FunFam	Retrovirus-related Pol polyprotein LINE-1	346	500	-	-
	Vimu6g02560	661	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	80	574	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Vimu6g02560	661	ProSiteProfiles	MCM family domain profile.	367	568	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02560	Vimu-Chr6	22250925	22256588	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g02560	41	571	Core DNA Replication Machinery Family	AT3G09660	66.298	0.0	719

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02560	K10737		-	gmx:100784549	851.662