Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02556 TTGCCAGATTCTTTTAGAGTGGAGTATCTTGTCCTGGATGAATCGGATAAGCTTTTTGAGCCAGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATTATTCGCTCGCTTTTCAGTGCTACTTTACCTGATTTTGTTGAAGTTCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAACTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTGTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTGAACAAGAGCGAGGAAATGCTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCACGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTCTACACAGAGGAAGACATTCCATTGCTGCGGAATGTTGCTAATCTAATGGCAGCATCGGGATGTGAAGTTCCGCCCTGGCTCATGGAGTTGCAAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 777 0.4311 MPDSFRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEVRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSEQERGNAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYTEEDIPLLRNVANLMAASGCEVPPWLMELQKKKWKKHRPKRDSISTKPDL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02556 258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 66 IPR014001 -
Vimu6g02556 258 Pfam Helicase conserved C-terminal domain 95 199 IPR001650 -
Vimu6g02556 258 Gene3D - 66 243 IPR027417 -
Vimu6g02556 258 SMART helicmild6 118 199 IPR001650 -
Vimu6g02556 258 CDD SF2_C_DEAD 78 208 - -
Vimu6g02556 258 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 77 238 IPR001650 -
Vimu6g02556 258 Gene3D - 3 65 IPR027417 -
Vimu6g02556 258 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 244 - -
Vimu6g02556 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 242 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02556 Vimu-Chr6 22233778 22235578 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02556 7 237 Eukaryotic Initiation Factors Gene Family AT3G19760 33.766 1.65e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02556 K14779 - gmx:100800969 461.07