Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02555 CGCAGTGAAGTTGAAGAAGGAACTGCAAGGTCGTGCTTGATTACAGAAACCCCTATATCATTTGTTTGTTCCATCTCCAATGGCCAACGACTCTTCGTTTTTGTTTTCCGGCATTCGTTTCAACACAAACAAGTTCGGCGCCGATATCGCCAGATTCCAGATTTGGAGCGTCGCCGAAGACGGAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAAGGAAACTATTCTGGTATTCACATCATCTTGCTTTGTTTACATTACTCCGTCTCTTGTATTCAAAGTTTCGTACCTCACTGTTGCTTCGTTTTCGTAAACACATAAAAGAAAATGTTGAAGGATTCAATGTGTTTAGAAATTCCGCATCTGTGGCGCAGTCCAGTGGCGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTGTGTAAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTTAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAATTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGGCAGACTATTCCAGTACTTTTAGATGGTCGAGAGTGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCCGAGAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAGTCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACGATTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGGCATGATGATTGA 1005 0.4179 RSEVEEGTARSCLITETPISFVCSISNGQRLFVFVFRHSFQHKQVRRRYRQIPDLERRRRRKRENEGSSRRENSVHEEEEAQRKLFWYSHHLALFTLLRLLYSKFRTSLLLRFRKHIKENVEGFNVFRNSASVAQSSGEVQADQESIELCKKKNKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFREPTPIQRQTIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKSLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRHDD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02555 334 Gene3D - 164 333 IPR027417 -
Vimu6g02555 334 PANTHER RNA HELICASE 136 326 - -
Vimu6g02555 334 Pfam DEAD/DEAH box helicase 214 331 IPR011545 GO:0003676|GO:0005524
Vimu6g02555 334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 334 IPR014001 -
Vimu6g02555 334 SMART ultradead3 209 330 IPR014001 -
Vimu6g02555 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 331 IPR027417 -
Vimu6g02555 334 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 190 218 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02555 Vimu-Chr6 22231947 22233547 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02555 201 330 Eukaryotic Initiation Factors Gene Family AT5G11200 33.582 4.99e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02555 K14779 - vum:124830243 411.764