Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02554 ATCAGATTGAGGAATGCCAAGAAAATGGGGAGGAAGGGAAATTGGTTTTCAAGCGTGAAGAAAGCTCTCAGCCCCGACTCAAAGGAGAAGAAAGATCAGAAATCAAGTACATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTACAGACTTCTGTCTCATACTCAGAAGCTGATAAGCTGCCATCGCCACCATCTGTTCCTCTTCCAGAAGAGATTAAATTAACTGATATTGAAAATGAAATCAGTCATGATCATGTTGTTGAAGTTGTAACTGCCGTTGAAGCCGAGGTACCTGTTCCTCCTGTTCAGATAGAAACTGTTAGGGTTGAAGCTGCTCGAATTCCTCGTTTTGCTGGTAAACCAAAAGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGTCTGGTTAGGCTGAAATTATTGATGGAAGGGTCGGTTGTAAAACGCCAAGCCACGAGTACCCTCCGATCTATGCAGACACTGTCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTGGAGGAGAATCAGGCTCTGCAGAGACAACTCTTACAGAAGCATGCGAGAGAGCTTGAGAGTTTGCGGGTCTGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGGAGAGAAAGAGCATTAGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTTTAAATCCTATGTTCATGGATCCAACAAATCCTGCCTGGGGATGGAGCTGGTTGGAACGATGGATGGCAGCCCGGCCATTAGAGAACCGCAGCCAGGTGGATAAAGAGTTAAATGATCATGGATCCGTGAAAAGCTCAAGCCGCAGCATTACTGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCACTCTCCAACAGCCAGCCAAAATCCTGGCTCGCCAAGCTTTCAGTCCACTCCTTCCAAGCGAGTTTCGGCATCTGCTAAGAAATCAAAGAAGGCAAGTCCAAGGGGCAGCTGGATTACAGACGAGGACTCTAAAAGCTTGGTGAGTGTCCAGTCAGATCGGTTCCGGAGGCACTCGATCGCAGGTTCGTCGGTGAGAGACGACGAGAGCCTTGCCAGCTCTCCAGCAATTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAATCGAGGACACAGAGTCCATTAGCCCCAGAAAATGGAAAAACTGAGAAAGGATCCTTTGGAACTGCAAAGAAGCGGCTATCTTTCCCAGCTTCACCTTCCAGGCCAAGGCGCCATTCAGGTCCACCAAAGGTAGAAATCAGCTTAAATGCAGAGTTATCTGTGGACAAGGTTGTGGACAGTTGA 1446 0.4668 IRLRNAKKMGRKGNWFSSVKKALSPDSKEKKDQKSSTSKKKWFGKQKLQTSVSYSEADKLPSPPSVPLPEEIKLTDIENEISHDHVVEVVTAVEAEVPVPPVQIETVRVEAARIPRFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGSVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRVWMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSLNPMFMDPTNPAWGWSWLERWMAARPLENRSQVDKELNDHGSVKSSSRSITGGEISKSFARFQLNSEKHSPTASQNPGSPSFQSTPSKRVSASAKKSKKASPRGSWITDEDSKSLVSVQSDRFRRHSIAGSSVRDDESLASSPAIPSYMVPTQSAKAKSRTQSPLAPENGKTEKGSFGTAKKRLSFPASPSRPRRHSGPPKVEISLNAELSVDKVVDS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02554 481 MobiDBLite consensus disorder prediction 408 432 - -
Vimu6g02554 481 MobiDBLite consensus disorder prediction 1 68 - -
Vimu6g02554 481 MobiDBLite consensus disorder prediction 329 354 - -
Vimu6g02554 481 MobiDBLite consensus disorder prediction 23 39 - -
Vimu6g02554 481 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Vimu6g02554 481 Gene3D - 102 150 - -
Vimu6g02554 481 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Vimu6g02554 481 MobiDBLite consensus disorder prediction 329 468 - -
Vimu6g02554 481 PANTHER IQ-DOMAIN 5-RELATED 9 462 - -
Vimu6g02554 481 MobiDBLite consensus disorder prediction 42 58 - -
Vimu6g02554 481 SMART iq_5 122 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02554 Vimu-Chr6 22224337 22227452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02554 9 466 IQD Protein Family AT5G03040 54.737 1.78e-153 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02554 - - gmx:100800080 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02554 6 22224337 22227452 Vimu6g02554 6 22224337 22227452 ECH
Vimu6g02554 6 22224337 22227452 Vimu3g01127 3 18025962 18028967 PCT