Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02550 ATGGGTATTTTGTGGGTGGTTCCTGACTTCTTCCATGGAGAACCCTACAATAGTGAGAATGTGAGCAGGCCCTTCGATCCTTGGTTTAAAGATCATGACCAGAAACCCCTATATCATTTGTTTGTTCCATCTCCAATGGCCAACGACTCTTCGTTTTTGTTTTCCGGCATTCGTTTCAACACAAAGAAGTTCGGCGCCGATATCGCCAGATTCCAGAAAAAAGATAACGATACTGATTCGGCGAAGATTTGGAGCGTCGCCGAAGACGGAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCTGAAAATGTTGAAGGATTCAATGTGTTTAGAAATTCCGCATCTGTGGCGCAGTCCAGTGGTGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTCTGTAAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAATTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGGCAGACTATTCCAGTACTTTTAGATGGTCGAGAGTGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACTCCGAGAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCCGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAGTCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACGATTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGGCATGATGATTGA 996 0.4257 MGILWVVPDFFHGEPYNSENVSRPFDPWFKDHDQKPLYHLFVPSPMANDSSFLFSGIRFNTKKFGADIARFQKKDNDTDSAKIWSVAEDGSAKTREAVEEKTASTKKRKRKGNSSENVEGFNVFRNSASVAQSSGEVQADQESIEFCKKKNKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFREPTPIQRQTIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDSEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKSLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRHDD 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02550 331 MobiDBLite consensus disorder prediction 94 118 - -
Vimu6g02550 331 Gene3D - 161 330 IPR027417 -
Vimu6g02550 331 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 331 IPR014001 -
Vimu6g02550 331 MobiDBLite consensus disorder prediction 94 115 - -
Vimu6g02550 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 328 IPR027417 -
Vimu6g02550 331 PANTHER RNA HELICASE 109 323 - -
Vimu6g02550 331 Pfam DEAD/DEAH box helicase 211 328 IPR011545 GO:0003676|GO:0005524
Vimu6g02550 331 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 187 215 IPR014014 GO:0003724
Vimu6g02550 331 SMART ultradead3 206 327 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02550 Vimu-Chr6 22207742 22209754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02550 198 327 Eukaryotic Initiation Factors Gene Family AT5G11200 33.582 1.35e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02550 K14779 - vum:124830243 535.798