Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02546 ATGACTGTTTTTTTCATGGAATGCCTCTTAGTTGATCCTAAAGAGCGACCGATGCTACTTGCCGAACAATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAACTTATATTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCGAAGAATGCGGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCGTTAGTTGTTGATAGTGGTGCTGGATCAACTACAGTTGCACCAGTACTGGATGGTTATGTTCTTCAAAAGGCTGTGATAAGTTCTCCTATAGGAGGACAATTTCTGACAGAATGCTTGACGAGAAGTTTGGAAGCCAAAGGTATCACACCAAGACCTCGATATTCATTCAAGAAAAAGGAAATAAGTCCTGGGAACCTTCAGGTATTTTATAATTGA 411 0.4063 MTVFFMECLLVDPKERPMLLAEQCSNTQEQRERAAELIFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGAGSTTVAPVLDGYVLQKAVISSPIGGQFLTECLTRSLEAKGITPRPRYSFKKKEISPGNLQVFYN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02546 136 Pfam Actin 5 123 IPR004000 -
Vimu6g02546 136 SUPERFAMILY Actin-like ATPase domain 61 119 IPR043129 -
Vimu6g02546 136 Gene3D Actin; Chain A, domain 4 95 116 - -
Vimu6g02546 136 CDD NBD_sugar-kinase_HSP70_actin 13 90 - -
Vimu6g02546 136 PANTHER ACTIN 4 110 IPR004000 -
Vimu6g02546 136 SUPERFAMILY Actin-like ATPase domain 4 68 IPR043129 -
Vimu6g02546 136 PRINTS Actin signature 55 74 IPR004000 -
Vimu6g02546 136 PRINTS Actin signature 30 43 IPR004000 -
Vimu6g02546 136 Gene3D - 53 94 - -
Vimu6g02546 136 Gene3D - 5 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02546 Vimu-Chr6 22188590 22190656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02546 5 112 Cytoskeleton Gene Families AT5G09810 38.889 2.73e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02546 K11340 - gmx:100819549 223.402