Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02544 ATGCTCCCAAGGCCGTTTTCCCCTCTGTTGTTGGTGCAATTGATCAAATGGACATTGATGGACCTGTTCATGCTGGAGTGTCATTTGGATCTGCTGTGGATTTACAGAACAATAAAAAAAAATCATGAATCTGACAGAACCAAGGAAAAATGCAAACTTTATATAGGATCTCAGTCCTCGGGATACCGTCGAGACTATATGGAGCTGCTCTCACCATTGAAGAATGGAGTTATTGTTGACTGGAATATTGTTGACAACATATGGGATCATGCTTTGAGGGAATGCCTCTTAGTTGATCCTAAAGAGCGACCGATGCTACTTGCCGAACAATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCGAAGAATGCGGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCGTTAGTTGTTGATAGGTATGAGATTTTTTAA 486 0.4115 MLPRPFSPLLLVQLIKWTLMDLFMLECHLDLLWIYRTIKKNHESDRTKEKCKLYIGSQSSGYRRDYMELLSPLKNGVIVDWNIVDNIWDHALRECLLVDPKERPMLLAEQCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDRYEIF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02544 161 Gene3D - 32 160 - -
Vimu6g02544 161 PANTHER ACTIN 50 156 IPR004000 -
Vimu6g02544 161 Pfam Actin 46 156 IPR004000 -
Vimu6g02544 161 SUPERFAMILY Actin-like ATPase domain 46 155 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02544 Vimu-Chr6 22175679 22177652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02544 54 156 Cytoskeleton Gene Families AT5G09810 36.893 5.80e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02544 K11340 - vra:106779327 248.44