Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02538 ATGGGGCACAGGCATGTATATAACACATCTCCATTGTTTGAGGGTGAGCCTGACCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAATGTTATATACGCCTCACTTCTACTCATCACTGTTGCAGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTCCGGACAATATGTCTATAGATAACATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGGTATGCATCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATAATGATCATTTTGTGCATTCGTCTAATGCTGGAGCATTCTTTACAGTGTCAGATAATCACGTACACCAACCTTCTTCTTCCAATTATGACAGACATACATTTAATGTTGATAATAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAAGTGATATTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCACTGGGATCATTTTACTATGACACCCACATTCAGAGGTTCTGGCCTTTCAGTAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCTGCACTTGATTTGGATTCCAACCCATCAAGGACCCATTTATCCACCAATCATTCTCACACTTCTTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCCACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTGGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTGCTCCTACTCAAAGTTTTCAAAATAATCAAACTCGGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGGCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGATATCGCACGTTGACTGAGGAGAGTGGTCTTGCCGAACGATTTGCCTCTGAGGTATCTCTTGCAGTATCTCAAGGAACTACTGTTTTTGTGTCAGTATTGATGGAAATATACACCTGTATAGTTTCTGGAATTTTGACGGCATGTTTATGCTTGTGCATCAATGTTGGAGATGGTTTCTTGGTTATTGAGCGTGCATCGATGTATGATTCCAGGAATATCCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACGGGACTCTCTGAGGATATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGATTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCTTTGGCTGAGGATACAAAGGATAAATAA 1815 0.4171 MGHRHVYNTSPLFEGEPDQNWNHMHIDQHYVHLGNVIYASLLLITVAGRTSTSENGSFIYPPDNMSIDNISFPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNNDHFVHSSNAGAFFTVSDNHVHQPSSSNYDRHTFNVDNSFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSSDIPISSELWQDKPNIDSQYMHWDHFTMTPTFRGSGLSVKGEGSLRNVRSRSALDLDSNPSRTHLSTNHSHTSYPTLPPVDHSSLVDVSGQTSTLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGATVGNASVDVGCFHHEFGTSRNPAPTQSFQNNQTRNARGIQSNYSQRSTPTFGASSSLRMGHVTSLDEGLPMVAESYSSRHPRALSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEVSLAVSQGTTVFVSVLMEIYTCIVSGILTACLCLCINVGDGFLVIERASMYDSRNILDQHREMRMDIDNMSYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02538 604 CDD RING-H2_RNF24-like 551 596 - -
Vimu6g02538 604 MobiDBLite consensus disorder prediction 234 265 - -
Vimu6g02538 604 SMART ring_2 551 592 IPR001841 -
Vimu6g02538 604 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 516 597 - -
Vimu6g02538 604 Pfam Ring finger domain 550 593 IPR001841 -
Vimu6g02538 604 ProSiteProfiles Zinc finger RING-type profile. 551 593 IPR001841 -
Vimu6g02538 604 SUPERFAMILY RING/U-box 541 596 - -
Vimu6g02538 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 516 597 IPR013083 -
Vimu6g02538 604 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 106 597 IPR045191 GO:0061630
Vimu6g02538 604 MobiDBLite consensus disorder prediction 78 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02538 Vimu-Chr6 22127010 22129681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02538 1 603 C3H Transcription Factor Family AT2G37150 37.377 3.72e-101 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02538 - - gmx:100803627 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02538 6 22127010 22129681 Vimu6g02538 6 22127010 22129681 ECH