Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02536 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATCTGTAAAAAGTATGATAAATACGACGTCGAGAAACAAAGGGATTCCAATATCTCCGCTGACGATGGATTCGCAAAACTCTACGCCTCCGTCGATACCGAAATCGAGACCTTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAAGGCGTCTACTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTGTTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTATGAAAAAGGTTGGTTTTTCGCTTTCTCTGCTTCTTGGATTTAGGTTGGAACCAGGAATTGCATTCAATGCATATGATGTAAATGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGTACCCAAACAAACGGGAAGTTGGGCAGCTTCTGCCTCACGTCCTGGAATTAAATTTGATTCAGATGGACAATTTGATGATGAATACTTCCATCAAACCGAAGAATCAAGTCGATTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATAGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTACCACTGATGGATGAGATTGATGCTAAGGTGGACAAGGCATCCTCCGACCTTAAAAATACCAATGTTAGACTTCGAGACACGGTGAACCAGGTCTTTTTGACTGAAAATCTTATTCTTAAGTTTTCATCAGTTTCCAATTGCATCAGTGATGAATTTTATGTTGAACCTTATATAGTTTTGGTTTTCATCCAGCTTCGGTCCAGTCGAAACTTCTGTATTGACATTGTTTTATTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAAGTAA 957 0.4086 MSVIDILTRVDSICKKYDKYDVEKQRDSNISADDGFAKLYASVDTEIETLLQKAETASKEKSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKVGFSLSLLLGFRLEPGIAFNAYDVNGLSSQEFAARNDLVLALPDRIQAIPDGTPAVPKQTGSWAASASRPGIKFDSDGQFDDEYFHQTEESSRFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQVFLTENLILKFSSVSNCISDEFYVEPYIVLVFIQLRSSRNFCIDIVLLIIILGIAAYLYK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02536 318 Gene3D - 174 256 - -
Vimu6g02536 318 CDD SNARE_Qc 198 253 - -
Vimu6g02536 318 PANTHER SYNTAXIN 42 256 IPR045242 -
Vimu6g02536 318 ProSitePatterns Syntaxin / epimorphin family signature. 199 238 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu6g02536 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 193 255 IPR000727 -
Vimu6g02536 318 FunFam Putative syntaxin-71-like 193 254 - -
Vimu6g02536 318 Coils Coil 40 60 - -
Vimu6g02536 318 SUPERFAMILY SNARE fusion complex 188 253 - -
Vimu6g02536 318 SMART tSNARE_6 188 255 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02536 Vimu-Chr6 22110738 22112964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02536 1 317 SNARE and Associated Proteins AT3G09740 62.696 3.16e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02536 K08506 - gmx:100804155 414.075