Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02535 ATGGACAAAGATGGTAATTCAGAAATCCGACTTCCTCCAGGGTTTAGATTCCACCCTTCTGATGAAGAGCTGATTGTTCACTATCTGAGAAACAAAGTTACATCATCACCCCTTCCTGGCTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCAAAGTAAGGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCCAGGGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTATTGGAAGGCTACTGGCACTGACAGACCCATTTTTACTTCATGTGGGATGAAGAATATTGGAGTCAAGAAGGCCCTTGTGTTCTACAAGGGTCGAGCACCAAAAGGATCTAAAACTGATTGGATCATGCACGAGTACAGGTTGCACAATTCCATGAACTCCATTTCACAGCAAAGAAGGTCCATGAGACTGGATGAGTGGGTGCTGTGTCGGGTCCGACAGAAAACAAGCAACACAAGAAGCAATTGGGAAGAGTGTATTTATGAAGCAACAAGCCAGTTTGAAGAGATGAATGAGAACTCAAATCCTGAAGCAGCCAAAAATTCTGTGCATAATGAATATCCATTGTTGCCTTATATTCTGGCTTCTGTGTCTGATTCTATTGGCCTAGCCTCAGGCTCATCAGGCTGTGGTTGTAATGATGATGGAAAAGCATATGCTTCATTGCATGATAAGAACTCGAATATAATAATTGGAGGAGAGTTTATGGCAGCTGAGGGTTTGTTTAATCCACTGAAGAGAAAAAACAGTAAAGAGAAGGAGTTGGAGTTGTATGCTTCCCTCAATGAAAAACCAAGCGAAGAAGATGATGTTGGGAATGAGCATGATCTAAACAAAGACTGCAATTCCAATAACTTTGACCATTGGACTTCCATCATATTACCCCAAGAGCTTAATATCTAG 954 0.4182 MDKDGNSEIRLPPGFRFHPSDEELIVHYLRNKVTSSPLPGSFIAEIDLYKYNPWELQSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDRPIFTSCGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRLHNSMNSISQQRRSMRLDEWVLCRVRQKTSNTRSNWEECIYEATSQFEEMNENSNPEAAKNSVHNEYPLLPYILASVSDSIGLASGSSGCGCNDDGKAYASLHDKNSNIIIGGEFMAAEGLFNPLKRKNSKEKELELYASLNEKPSEEDDVGNEHDLNKDCNSNNFDHWTSIILPQELNI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02535 317 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Vimu6g02535 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 240 - -
Vimu6g02535 317 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Vimu6g02535 317 FunFam NAC domain-containing protein 72-like 20 170 - -
Vimu6g02535 317 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vimu6g02535 317 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02535 Vimu-Chr6 22105855 22107043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02535 1 177 NAC Transcription Factor Family AT1G61110 62.632 6.89e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g02535 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02535 - - gmx:100788799 487.263