Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02532 TATGAGCAATCCGAGAGGAGCTACAAACAGTTTCTGGAGTTGAAGCCTGGAGACTCGGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCTCAAAATCCTTGGAATTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCTAAGCTTCTTAAAGTGAAGCTGTTAATAGCTGATAAAGACTATGAGGGTGCCATTGCTGAGTCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGAGTAAAAGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGTTGCTCTTGCTGTAGACCCTGACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGAAAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAACTTGTTGAAGCTCTTGTTCAGGATATGAGTATCCGTGAAGCAGTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTACAAGACTTTGGGAATTTCTAAAACTGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTGGACAAAAGAGAAGAAGCAGAAGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTGAGCGATGAAGACAAACGTGTGAGATATGACAGGGGGGAGGACCTTGAAGAGATGGGAATGGGCGGCGGTGGCGGTGGTTTCAACCCTTTCGGTGGTGGGGGGCAGCAGTTTACCTTTAATTTTGAGGGGGGCTTCCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGAGGGTTTGAATTTCACTTCTGA 996 0.4428 YEQSERSYKQFLELKPGDSAAEKELSQLLQAQSALETAQSLYDLGNFSKSLEFIDKVVLVFSPDCTKAKLLKVKLLIADKDYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRVKAEDNASKGKLRVAVEEFKVALAVDPDHLAHNVHLHLGLCKVLVKLGRGKDALESCSEALKINEELVEALVQDMSIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGMGGGGGGFNPFGGGGQQFTFNFEGGFPGGGFGGGFPGGFEFHF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02532 331 Gene3D Tetratricopeptide repeat domain 1 216 IPR011990 GO:0005515
Vimu6g02532 331 FunFam DnaJ subfamily C member 7 214 322 - -
Vimu6g02532 331 SUPERFAMILY TPR-like 76 211 IPR011990 GO:0005515
Vimu6g02532 331 Gene3D DnaJ domain 217 322 IPR036869 -
Vimu6g02532 331 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 194 331 IPR044620 -
Vimu6g02532 331 Coils Coil 252 272 - -
Vimu6g02532 331 Pfam DnaJ domain 216 279 IPR001623 -
Vimu6g02532 331 PRINTS DnaJ domain signature 254 274 IPR001623 -
Vimu6g02532 331 PRINTS DnaJ domain signature 218 236 IPR001623 -
Vimu6g02532 331 PRINTS DnaJ domain signature 236 251 IPR001623 -
Vimu6g02532 331 PRINTS DnaJ domain signature 274 293 IPR001623 -
Vimu6g02532 331 SMART dnaj_3 215 274 IPR001623 -
Vimu6g02532 331 ProSitePatterns Nt-dnaJ domain signature. 259 278 IPR018253 -
Vimu6g02532 331 ProSiteProfiles dnaJ domain profile. 216 282 IPR001623 -
Vimu6g02532 331 SUPERFAMILY Chaperone J-domain 210 321 IPR036869 -
Vimu6g02532 331 CDD DnaJ 216 271 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02532 Vimu-Chr6 22055500 22057740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02532 212 279 C2H2 Transcription Factor Family AT1G74250 47.222 1.28e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02532 K09523 - gmx:100804685 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02532 6 22055500 22057740 Vimu6g02532 6 22055500 22057740 ECH