Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02527 ATGGGCAACGTCTCAAGCGGCGGCGCCAACCACCGTCGCCGGCACAGCGGAGCTTTAAGGCGGAATCATCCGCCGCCTCCACCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTTGTGTACCAGGGTGCCGCACCTTATGCGAACCCTACCCTACATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATGCCTCATCAGCATCATCATCAACAGCATCAACATCATCATCTACAGCATCAACATCATCATCCACAAAATCAGCATCAACATCATCTGCACATGGACCCGGCCTGGATTCCAGGGCGTTACCCTTGTGGGCCCGTGATGCCTAACCCTGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGAGTCTTAGGCTTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGGCTCGTTCATTTGAGCTCTCATGGTAGCTTGAGTTTTACGGAGTGTTATGGCAACTCTTTTCTTTTACCTTACCAACACCCGATCCTGTGGTTACCCTCTGAATCACATGAATCATGGTTTGGCAGTGAAGTTGGTCATGTCCCCAAAACCAGCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTCCATCCTCACACCAGTGAAGGAAAACAATCCTGCTCCACTGACAGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAGTCCGAGTTACTGAAAGTGGGGGATATGGATGTGTACCCTCTAGCAGTAAAGGCAGACGCTTCCCCTGGTAATCATGATGAGTCGGATAGAACTCCAGCATCTGGTAACACAAACTCACAGATTACCCAAGCAGTGTTTGAAAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACGGAAGCTGACGTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCGGAGCCTCGGGATACAATTGTTCATCCCTGCCGCCATATGTATGTCACTTTTCAGTCCGGGGCTCTTGGCAAACTCTGTATGTGTAGTGGATGTGCGAAGGTATTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGA 1299 0.4927 MGNVSSGGANHRRRHSGALRRNHPPPPPPVTPQPEIAANPFVYQGAAPYANPTLHYPQYHYPGYYPPAPPMPHQHHHQQHQHHHLQHQHHHPQNQHQHHLHMDPAWIPGRYPCGPVMPNPAPFVEHQKAVTIRNDVNIRKESLRLEPDEGNSSHFLISFSFDATVSGRLVHLSSHGSLSFTECYGNSFLLPYQHPILWLPSESHESWFGSEVGHVPKTSVTIYFFAKEGEDSILTPVKENNPAPLTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPASGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSTEADVDESDQGKECVICLSEPRDTIVHPCRHMYVTFQSGALGKLCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02527 432 MobiDBLite consensus disorder prediction 75 96 - -
Vimu6g02527 432 PANTHER MAHOGUNIN 1 427 IPR045194 GO:0061630
Vimu6g02527 432 MobiDBLite consensus disorder prediction 1 36 - -
Vimu6g02527 432 FunFam probable E3 ubiquitin-protein ligase LOG2 350 427 - -
Vimu6g02527 432 SUPERFAMILY RING/U-box 365 422 - -
Vimu6g02527 432 MobiDBLite consensus disorder prediction 290 310 - -
Vimu6g02527 432 CDD mRING-HC-C3HC5_MGRN1-like 364 417 IPR045195 -
Vimu6g02527 432 MobiDBLite consensus disorder prediction 65 100 - -
Vimu6g02527 432 MobiDBLite consensus disorder prediction 21 35 - -
Vimu6g02527 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 427 IPR013083 -
Vimu6g02527 432 ProSiteProfiles Zinc finger RING-type profile. 366 417 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02527 Vimu-Chr6 22020624 22024899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02527 35 384 C3H Transcription Factor Family AT3G09770 46.537 2.24e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02527 - - gmx:100807343 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02527 6 22020624 22024899 Vimu6g02527 6 22020624 22024899 ECH